Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02736 and BPUM_1594

See Amino acid alignment / Visit BSNT_02736 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:23
# Commandline: needle
#    -asequence dna-align/BSNT_02736.1.24716.seq
#    -bsequence dna-align/BPUM_1594.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02736-BPUM_1594.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02736-BPUM_1594.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02736
# 2: BPUM_1594
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 796
# Identity:     624/796 (78.4%)
# Similarity:   624/796 (78.4%)
# Gaps:           8/796 ( 1.0%)
# Score: 2384.0
# 
#
#=======================================

BSNT_02736         1 TTGGCAAAGCTCGAATGGTATTTTGAATATGAAATTCAAGTGAACCGCCC     50
                     ||||||||||||||||||||||||||||||||.||.||.||.|||||.||
BPUM_1594          1 TTGGCAAAGCTCGAATGGTATTTTGAATATGAGATACAGGTAAACCGTCC     50

BSNT_02736        51 CGGACTGCTCGGGGATATTTCATCTCTTCTTGGGATGCTTTCTATCAACA    100
                     ||||||..|.||.||.|||||||||||..|.|||||||||||.||.||.|
BPUM_1594         51 CGGACTATTAGGAGACATTTCATCTCTGATGGGGATGCTTTCAATTAATA    100

BSNT_02736       101 TCGTAACGATAAACGGCGTCGATCTTTCCAGAAGGGGAATGCTCCTCAGG    150
                     |.||.||.||.||.||.||.|||.|.||.|||.|.||||||||.||..|.
BPUM_1594        101 TTGTGACAATTAATGGTGTTGATGTATCAAGACGCGGAATGCTTCTGCGC    150

BSNT_02736       151 TGCCGCCATATAGATCAAATTAAACGATTAGAATCAATCTTAAAAACGAT    200
                     ||...|||.|.|||.||||||||.||..|.||||||||.|||||.||.||
BPUM_1594        151 TGTGACCACACAGACCAAATTAAGCGCCTTGAATCAATTTTAAATACAAT    200

BSNT_02736       201 GGAAACAATTAAAGTAACGAAGCTTAGAGAACCGAGGCTTCGCGACCGAC    250
                     ||||||.||.|||||||||||..|.|||.|.||.|..|||||.||||| |
BPUM_1594        201 GGAAACGATAAAAGTAACGAAATTAAGACAGCCAAAACTTCGTGACCG-C    249

BSNT_02736       251 TT-GCCGTACGCCACGGCCGTTATATTCAACGGGATGCCGATGACAAGAA    299
                     || ||.||.||.||||||.|.||||||||.||.|||||.||||||||.||
BPUM_1594        250 TTAGCGGTTCGTCACGGCAGATATATTCAGCGTGATGCAGATGACAAAAA    299

BSNT_02736       300 AACGTTCCGCTTTGAACGGGACGAGCTTGG-CTTATTAGTCGATTTTATG    348
                     .||||||||.||||||.||||||||||||| |||.|| ||.|||||||||
BPUM_1594        300 GACGTTCCGATTTGAAAGGGACGAGCTTGGTCTTCTT-GTTGATTTTATG    348

BSNT_02736       349 GCCGAATTGTTCAAAAAAGAAGGCCATAAATTAATCGGAATCAGAGGTAT    398
                     ||.||..|.||.|||||||||||.||||||||.||.||.||..|.||.||
BPUM_1594        349 GCTGAGCTATTTAAAAAAGAAGGACATAAATTGATTGGGATTCGCGGGAT    398

BSNT_02736       399 GCCGCGTGTCGGGAAAACGGAATCGATTGTAGCCTCTAGTGTGTGTGCAA    448
                     ||||||||||||.|||||.|||||.|||||.|||||.|||||.|||||.|
BPUM_1594        399 GCCGCGTGTCGGAAAAACAGAATCAATTGTGGCCTCAAGTGTATGTGCCA    448

BSNT_02736       449 GCAAAAGGTGGCTGTTTGTGTCATCAAC-CTTGCTGAAGCAGACGATAAG    497
                     |||||||.|||||.|||||.|||||.|| ||| .||||.||||||||..|
BPUM_1594        449 GCAAAAGATGGCTTTTTGTATCATCCACTCTT-TTGAAACAGACGATCCG    497

BSNT_02736       498 AAGCCAGCTGATTGCCGATGAATACAGCACTGAAAATGTCTTTATCGTTG    547
                     |||.||.||||||||.||||||||.|||.|.||.||.||.|||||..|||
BPUM_1594        498 AAGTCAACTGATTGCGGATGAATATAGCCCAGATAACGTTTTTATTATTG    547

BSNT_02736       548 ACGGAATTGTGTCAACACGAAGAGGATCGGA-ACGCCATCTCCAGCTGGT    596
                     |.||.||||||||.||.||||||||.||.|| |.| ||..|.|||||..|
BPUM_1594        548 ATGGGATTGTGTCGACGCGAAGAGGTTCTGAGAAG-CACTTGCAGCTTTT    596

BSNT_02736       597 CCGAGAAATCATGCGGCTGCCTGCAACAAAAGTGGTGGAGCATCCGGACA    646
                     ..|||||||.|||.|.|||||.|||||.|||||.||.||||||||.||||
BPUM_1594        597 AAGAGAAATTATGAGACTGCCGGCAACGAAAGTAGTAGAGCATCCAGACA    646

BSNT_02736       647 TATTCGTTCAAAATACAGAGTATACACTAGATGACTTTGATTATATTATT    696
                     |.||..||||||||.||||.||||||.|.|||||.||.||.|||||||||
BPUM_1594        647 TCTTTATTCAAAATTCAGAATATACAATGGATGATTTCGACTATATTATT    696

BSNT_02736       697 GAACTGAGAAATGACCCTGATGAGGTTATTACATATGAACATGCCGAGGA    746
                     |||.||.|.|||....|.|||||.|..|||||||||||.||.||.||.||
BPUM_1594        697 GAATTGCGTAATAGTGCAGATGAAGAGATTACATATGAGCACGCTGAAGA    746

BSNT_02736       747 ACCCCAAATGTTTGATCAATCCGGGTTTTCAAGCTTTGATTTTTAA    792
                     |||.|||.||||||||||.||.||.|||||..||||.|||||||||
BPUM_1594        747 ACCACAAGTGTTTGATCATTCTGGTTTTTCTGGCTTCGATTTTTAA    792


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