Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02743 and BPUM_1599
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:24
# Commandline: needle
# -asequence dna-align/BSNT_02743___ymdA.1.24716.seq
# -bsequence dna-align/BPUM_1599___ymdA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02743___ymdA-BPUM_1599___ymdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02743___ymdA-BPUM_1599___ymdA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02743___ymdA
# 2: BPUM_1599___ymdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1578
# Identity: 1309/1578 (83.0%)
# Similarity: 1309/1578 (83.0%)
# Gaps: 30/1578 ( 1.9%)
# Score: 5479.0
#
#
#=======================================
BSNT_02743___ 1 ATGACCCCAATTATGATGGTT---CTCATCTCCATTTTGCTGATTCTACT 47
|||.|.|| ||.||||.|| .||||||||||||||||||..|||.|
BPUM_1599___y 1 ATGTCGCC---TACGATGTTTACGATCATCTCCATTTTGCTGAGCCTAAT 47
BSNT_02743___ 48 CGGTTTAGTTGTTGGCTACTTTGTTCGTAAAACCATTGCCGAAGCGAAAA 97
|.|||||||||||||||||||||||||||||||||||||.|||||.||||
BPUM_1599___y 48 CTGTTTAGTTGTTGGCTACTTTGTTCGTAAAACCATTGCAGAAGCAAAAA 97
BSNT_02743___ 98 TTGCGGGCGCACGCGGTGCA------GCCGAGCAAATTCTTGAAGATGCG 141
|..|.||||||.| | |||||.||||||.||||.|||||.
BPUM_1599___y 98 TATCCGGCGCAAG------AAACATGGCCGAACAAATTGTTGAGGATGCA 141
BSNT_02743___ 142 AAGCGTGATGCTGAAGCACTGAAAAAAGAAGCTCTGCTT-GAAGCAAAGG 190
|||||||||||.||||||.||||.||||||||.|| ||| |||||.||.|
BPUM_1599___y 142 AAGCGTGATGCGGAAGCATTGAAGAAAGAAGCGCT-CTTGGAAGCGAAAG 190
BSNT_02743___ 191 ATGAAATCCACAAACTTCGAATAGATGCTGAACAGGAAGTTCGTGAAAGA 240
|||||||.||.....||||..||||.||.||.||.|||||||||||||||
BPUM_1599___y 191 ATGAAATTCATTCCTTTCGTGTAGAGGCGGAGCAAGAAGTTCGTGAAAGA 240
BSNT_02743___ 241 CGAAATGAGCTTCAAAAACAAGAAAACCGTTTACTCCAAAAGGAGGAAAA 290
||.|||||||||||||.||||||||||||||||||.|||||.||||||||
BPUM_1599___y 241 CGTAATGAGCTTCAAAGACAAGAAAACCGTTTACTTCAAAAAGAGGAAAA 290
BSNT_02743___ 291 CCTTGATCGCAAACATGAGGGAA----TTGATAAACGGGAAGCGATGTTG 336
.||||||||||||.|| ||| |.|||||||||||..|..|||||
BPUM_1599___y 291 TCTTGATCGCAAAGAT----GAATCTTTAGATAAACGGGAGTCCCTGTTG 336
BSNT_02743___ 337 GAGAAGAAAGATCATTCTCTGAATGAACGACAACAACATATTGAAGAGAT 386
|||||||.||||||||||||||||||||||||||||||||||||||||||
BPUM_1599___y 337 GAGAAGAGAGATCATTCTCTGAATGAACGACAACAACATATTGAAGAGAT 386
BSNT_02743___ 387 GGAAAGCAAAGTGGATGAGATGATTCGTATGCAGCAGTCTGAGTTGGAAC 436
||||||||||||||||||.|||||||||.|||||.|..|.||||||||||
BPUM_1599___y 387 GGAAAGCAAAGTGGATGATATGATTCGTTTGCAGAAAGCCGAGTTGGAAC 436
BSNT_02743___ 437 GAATTTCGAGTCTAACTCGTGACGAAGCGAAACAAATCATTCTTGAGCGG 486
|.|||||.|||.|||||||.||.||||||||||||||||||||.||.|..
BPUM_1599___y 437 GTATTTCAAGTTTAACTCGAGATGAAGCGAAACAAATCATTCTGGATCAA 486
BSNT_02743___ 487 GTTGAAAACGAGCTTTCACATGACATCGCCATCATGACAAAAGAAACTGA 536
||||||||.||||||||.||.|||||.||..|||||||.||||||.||||
BPUM_1599___y 487 GTTGAAAATGAGCTTTCCCACGACATTGCAGTCATGACGAAAGAATCTGA 536
BSNT_02743___ 537 AAACCGTGCGAAAGAAGAGGCGGATAAGAAAGCGAAAAACATTCTTTCAC 586
||||||.||||||||||||||.|||||.||.|||||||||||||||||||
BPUM_1599___y 537 AAACCGAGCGAAAGAAGAGGCTGATAAAAAGGCGAAAAACATTCTTTCAC 586
BSNT_02743___ 587 TCGCCTTACAGCGCTGCGCAGCGGACCACGTTGCCGAAACAACGGTATCA 636
|.||.||||||||.||.|||||.||.||.||.||.|||||.||||||||.
BPUM_1599___y 587 TTGCGTTACAGCGTTGTGCAGCTGATCATGTAGCTGAAACGACGGTATCT 636
BSNT_02743___ 637 GTTGTCAATCTTCCAAATGATGAGATGAAAGGACGTATCATCGGACGGGA 686
||.|||||||||||||||||||||||||||||.|||||.||||||||.||
BPUM_1599___y 637 GTAGTCAATCTTCCAAATGATGAGATGAAAGGTCGTATTATCGGACGTGA 686
BSNT_02743___ 687 AGGGCGTAACATTCGTACGCTTGAAACGCTGACAGGAATTGACCTGATTA 736
|||.||.||.||.||||||.|.||||||.|.|||||.||||||.||||.|
BPUM_1599___y 687 AGGACGAAATATCCGTACGTTAGAAACGTTAACAGGTATTGACTTGATCA 736
BSNT_02743___ 737 TTGATGATACGCCTGAAGCTGTCATTCTTTCCGGATTTGATCCGATCAGA 786
|.||||||||.|||||||||||.||.||.||.||.|||||||||||.|||
BPUM_1599___y 737 TAGATGATACACCTGAAGCTGTTATCCTATCGGGCTTTGATCCGATTAGA 786
BSNT_02743___ 787 CGTGAGACAGCCAGAATTGCTCTTGATAAACTCGTTCAGGATGGCCGTAT 836
|||||.|||||.||.||.|||||.||.||..|.||.|||||||||||.||
BPUM_1599___y 787 CGTGAAACAGCGAGGATAGCTCTGGACAAGTTAGTCCAGGATGGCCGCAT 836
BSNT_02743___ 837 TCATCCGGCACGGATTGAAGAAATGGTTGAAAAATCTCGCCGCGAGGTCG 886
||||||.|||||.||||||||||||||.||||||||.|||||.||.||||
BPUM_1599___y 837 TCATCCTGCACGAATTGAAGAAATGGTGGAAAAATCACGCCGTGAAGTCG 886
BSNT_02743___ 887 ATGACTATATTCGTGAGATGGGTGAGCAAACGACATTTGAGGTTGGCGTT 936
||||.|||||.||||||||||||||||||||||||||.||.||.||.|||
BPUM_1599___y 887 ATGATTATATCCGTGAGATGGGTGAGCAAACGACATTCGAAGTCGGAGTT 936
BSNT_02743___ 937 CATGGCCTCCACCCAGATCTCATCAAGATCCTCGGCCGCTTAAAGTTCCG 986
|||||.||.||.||.|||||.|||||.||.|||||.||||||||.|||||
BPUM_1599___y 937 CATGGTCTGCATCCGGATCTTATCAAAATTCTCGGTCGCTTAAAATTCCG 986
BSNT_02743___ 987 TACAAGCTACGGTCAAAATGTGCTTAAGCATTCCATGGAAGTCGCA-TTC 1035
||||||.||.||.||||||||.||.||||||||.||.||.||.||| .||
BPUM_1599___y 987 TACAAGTTATGGACAAAATGTCCTGAAGCATTCAATTGAGGTTGCACATC 1036
BSNT_02743___ 1036 TTGGCCGGTCTAATGGCATCGGAGCTTGGTGAAGACGCAAAGCTTGCTAA 1085
|| ||.|||||.|||||.||.||||||||.|||||.|||||||||||.||
BPUM_1599___y 1037 TT-GCAGGTCTCATGGCTTCAGAGCTTGGAGAAGATGCAAAGCTTGCAAA 1085
BSNT_02743___ 1086 ACGTGCGGGTCTTCTTCACGACATCGGGAAAGCAATTGACCATGAAGTAG 1135
|||.||.||||||||.||.|||||.||.|||||.|||||.||||||||||
BPUM_1599___y 1086 ACGAGCAGGTCTTCTGCATGACATTGGAAAAGCCATTGATCATGAAGTAG 1135
BSNT_02743___ 1136 AAGGAAGCCACGTTGAGATCGGGGTAGAGCTTGCGACCAAATATAAAGAG 1185
|||||||||||||.||.||.||.||.|||||||||||.||||||||||||
BPUM_1599___y 1136 AAGGAAGCCACGTAGAAATTGGCGTTGAGCTTGCGACGAAATATAAAGAG 1185
BSNT_02743___ 1186 CACCCAGTCGTGATTAACAGTATTGCATCACACCACGGGGACGAGGAGCC 1235
||.||.||.||.||.|||||||||||.||.|||||.||.|||.|.||.||
BPUM_1599___y 1186 CATCCTGTTGTCATCAACAGTATTGCCTCTCACCATGGTGACCAAGAACC 1235
BSNT_02743___ 1236 GACTTCCATTATTGCTGTGCTGGTAGCTGCAGCAGATGCGCTTTCCGCTG 1285
|||.||.|||||.|||||.||.||.||.|||||||||||..|.||.||.|
BPUM_1599___y 1236 GACATCTATTATCGCTGTTCTTGTTGCGGCAGCAGATGCATTATCTGCAG 1285
BSNT_02743___ 1286 CAAGACCTGGCGCAAGAAGTGAGACGCTCGAGAATTATATTCGAAGACTT 1335
||.|.|||||.|||||||||||||||||.||.|||||.|||||.||||||
BPUM_1599___y 1286 CACGCCCTGGTGCAAGAAGTGAGACGCTTGAAAATTACATTCGGAGACTT 1335
BSNT_02743___ 1336 GAAAAACTCGAAGAAATTTCTGAGTCCTACGAAGGTGTTGAAAAATCATT 1385
||.|||.|.|||||.||.|||||.||.||.|||||||||||||||||.||
BPUM_1599___y 1336 GAGAAATTAGAAGATATCTCTGAATCTTATGAAGGTGTTGAAAAATCGTT 1385
BSNT_02743___ 1386 TGCCATTCAGGCTGGACGCGAAGTGCGTATTATGGTGAAGCCGGATTCAA 1435
|||.||.|||||||||||.|||||.|||||||||||||||||||||||||
BPUM_1599___y 1386 TGCGATACAGGCTGGACGTGAAGTACGTATTATGGTGAAGCCGGATTCAA 1435
BSNT_02743___ 1436 TTAATGATCTTGAGGCTCATCGACTGGCGCGAGATATCCGCAAGCGAATT 1485
|||||||||||||.|||||.||.||.||..|.|||||.||.|||||.|||
BPUM_1599___y 1436 TTAATGATCTTGAAGCTCACCGTCTAGCAAGGGATATTCGTAAGCGGATT 1485
BSNT_02743___ 1486 GAGGACGAGCTCGATTATCCAGGTCATATTAAGGTGACAGTAATCAGAGA 1535
|||||||||||||||||.||.|||||.|||||.|||||.||.||..||||
BPUM_1599___y 1486 GAGGACGAGCTCGATTACCCTGGTCACATTAAAGTGACGGTCATTCGAGA 1535
BSNT_02743___ 1536 GACTCGAGCCGTAGAGTATGCAAAATAA 1563
.|||||.||.|||||||||||||||||.
BPUM_1599___y 1536 AACTCGCGCAGTAGAGTATGCAAAATAG 1563
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