Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02748 and BPUM_1604
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:24
# Commandline: needle
# -asequence dna-align/BSNT_02748___kbl.1.24716.seq
# -bsequence dna-align/BPUM_1604___kbl.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02748___kbl-BPUM_1604___kbl.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02748___kbl-BPUM_1604___kbl.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02748___kbl
# 2: BPUM_1604___kbl
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1261
# Identity: 838/1261 (66.5%)
# Similarity: 838/1261 (66.5%)
# Gaps: 161/1261 (12.8%)
# Score: 2754.5
#
#
#=======================================
BSNT_02748___ 1 ATGACAAAGGAATTTGAGTTTTTAAAAGCAGAGCTTGATAGTATGAA--A 48
||||..||.|||||...||.||||.|||..||.||.||.|..||||| |
BPUM_1604___k 1 ATGATGAAAGAATTCACGTATTTACAAGATGAACTGGAAACAATGAAGCA 50
BSNT_02748___ 49 GAAA-------ACCATACATGGCAAGACAT------AAAACAGCTTGAAT 85
|.|| ||||.||||.|.||||.|| ||||| |||
BPUM_1604___k 51 GCAAGGCACCCACCAAACATTGAAAGAGATTGACTCAAAAC------AAT 94
BSNT_02748___ 86 CTATGCAGGGCCCATTTGTCACAGTGAATCACCAAAAAGTCATTCAGCTA 135
| ||.|| || ||.|||.|.|||.|.|||...|||||.|||||.
BPUM_1604___k 95 C-ATCCA-----CA---GTGACATTAAATGAACAATCTGTCATACAGCTC 135
BSNT_02748___ 136 TCTTCTAATAATTACCTCGGATTCACTTCACATCCTAGACTCATCAACGC 185
||.||.|||||.|||.|.||..||||.||.|||||.||.||.||.||.||
BPUM_1604___k 136 TCCTCAAATAACTACTTAGGCCTCACCTCGCATCCAAGGCTGATGAAAGC 185
BSNT_02748___ 186 CGCACAGGAGGCCGTTCAGCAGTATGGAGCCGGCACCGGATCAGTGAGAA 235
.|||.|.|||||..||.|..|.|..||.||.||.||.|||||.||..|||
BPUM_1604___k 186 GGCAAAAGAGGCGATTGATGAATTCGGTGCTGGTACAGGATCTGTACGAA 235
BSNT_02748___ 236 CGATTGCCGGTACATTTACAATGCATCAAGAGCTTGAGAAAAAGCTGGCA 285
||||.||.||.|||.|.||.|||||..||...|||||.||||||||.||.
BPUM_1604___k 236 CGATCGCTGGCACAATGACGATGCACGAACGCCTTGAAAAAAAGCTCGCT 285
BSNT_02748___ 286 GCCTTTAAAAAAACGGAGGCGGCACTTGTATTCCAATCAGGCTTCACAAC 335
||.||||||||.||.|||||.||.|||||.||.|||||||||||.||.||
BPUM_1604___k 286 GCATTTAAAAAGACCGAGGCAGCTCTTGTGTTTCAATCAGGCTTTACGAC 335
BSNT_02748___ 336 AAACCAAGGCGTACTTTCAAGTATTCTATCAAAAGAGGATATTGTCATCT 385
.||.|||||.||..|.||.||||||||..|||||||.||||||||.||.|
BPUM_1604___k 336 CAATCAAGGGGTTTTATCTAGTATTCTGACAAAAGATGATATTGTGATTT 385
BSNT_02748___ 386 CAGATGAATTGAACCATGCCTCTATTATTGACGGAATTCGACTGACAAAG 435
||||||||.||||.||||||||.||.||.|||||.|||||..|.|||||.
BPUM_1604___k 386 CAGATGAACTGAATCATGCCTCAATCATCGACGGCATTCGGTTAACAAAA 435
BSNT_02748___ 436 GCGGATAAAAAGGTGTATCAGCACGTCAATATGAGTGATTTAGAGCGGGT 485
||.||||||||.||.|||...||.|.||||||| || |||||
BPUM_1604___k 436 GCAGATAAAAAAGTATATGGTCATGCCAATATG---GA---AGAGC---- 475
BSNT_02748___ 486 GCTGAGA-----------AAGTCAATGAATTATCGGATGCGTCTGATTGT 524
.||||| ||.||.||||||||.||..|.|||||.||.||
BPUM_1604___k 476 -TTGAGAAAATTTTAAAGAAATCTATGAATTACCGCGTTCGTCTCATCGT 524
BSNT_02748___ 525 GACAGACGGCGTATTTTCCATGGATGGCAACATAGCTCCTCTGCCTGATA 574
.||||||||.||.||.||.||||||||..|.||.||.||.||..||||.|
BPUM_1604___k 525 CACAGACGGTGTGTTCTCAATGGATGGAGATATTGCGCCACTTTCTGAGA 574
BSNT_02748___ 575 TTGT-AGAGCTCGCTGAGAA--ATATGACGCATTTGTGATGGTGGATGAC 621
|||| || |||||| |||| ||||||.||||||||||||||.||.||.
BPUM_1604___k 575 TTGTCAG-GCTCGC--AGAAGCATATGATGCATTTGTGATGGTAGACGAT 621
BSNT_02748___ 622 GCCCATGCATCCGGAGTACTTGGCGAAAACGGCAGGGGAACGGTGAATCA 671
||.|||||.||.||.||.|||||.|||||.|||.|.||.||.||.||.||
BPUM_1604___k 622 GCACATGCCTCGGGTGTGCTTGGTGAAAATGGCCGCGGGACAGTCAACCA 671
BSNT_02748___ 672 CTTCGGTCTTGACGGCAGAGTTCATATTCAGGTCGGAACATTAAGCAAGG 721
.||....||.||||||||.||.|||||||||||.||||||.|.||.||||
BPUM_1604___k 672 TTTTAAACTCGACGGCAGGGTGCATATTCAGGTTGGAACACTTAGTAAGG 721
BSNT_02748___ 722 CAATCGGAGTGCTCGGCGGCTACGCTGCAGGTTCAAAGGTGCTGATCGAT 771
|..|||||||||||||||||||.|..||.||.|||...||..|.||.||.
BPUM_1604___k 722 CTGTCGGAGTGCTCGGCGGCTATGTAGCGGGATCAGCCGTTTTAATTGAC 771
BSNT_02748___ 772 TATTTGCGCCATAAAGGCCGTCCATTTTTATTCAGCACATCTCATCCGCC 821
|||||....|||||||...|.||.|||||||||||.||.||.||||||||
BPUM_1604___k 772 TATTTAAAACATAAAGCAAGACCGTTTTTATTCAGTACCTCACATCCGCC 821
BSNT_02748___ 822 GGCTGTCACTGCAGCTTGTATGGAAGCGATTGATGTCTTGCTTGAAGAGC 871
.|||||.|||..|||.|||...|||||||||||.||..||.|.||.||.|
BPUM_1604___k 822 AGCTGTGACTAGAGCATGTGAAGAAGCGATTGAAGTGCTGTTAGATGAAC 871
BSNT_02748___ 872 CGGA--GCATATGGAGCGCTTGTGGGAGAATACTGCCTATTTTAAAGCAA 919
|.|| |||| ||.|.|.||| ||||||||..|.||||||||||||
BPUM_1604___k 872 CAGAGCGCAT-TGAAACTCTT-TGGGAGAACGCGGCCTATTTTAAA---- 915
BSNT_02748___ 920 TGCTTGTGAAAA------------TGGGTTTGA-----CTCTCACAGAGA 952
||||| |||.||||| |.|..||||
BPUM_1604___k 916 -------GAAAAAGTCATCGGCCTTGGATTTGAGGTGGCACCAACAG--- 955
BSNT_02748___ 953 GTCAAACGCCGATTCTTCCTATTTTAATAGGTGATGAAGGTGTGGCAAAG 1002
|||||||.|||.||||.||..|.||.||.||.|| ||||
BPUM_1604___k 956 ---AAACGCCTATTATTCCAATGATGATTGGAGACGA------GGCA--- 993
BSNT_02748___ 1003 C-AATTTTCAGATCAGCTCCTTTCTCA-----------------CGGTGT 1034
| .|.|||| |.|||.||| |||.||
BPUM_1604___k 994 CTCACTTTC---------CGTTTTTCAAAAGCGTTAATCGAGCGCGGCGT 1034
BSNT_02748___ 1035 TTTTGCCCAAAGTATCATTTTCCCGACTGTAGCAAAGGGAAAAGCCAGAA 1084
||||||.|||.|.||...||||||.|||||||||||.||||||||.||||
BPUM_1604___k 1035 TTTTGCTCAAGGCATTGCTTTCCCAACTGTAGCAAAAGGAAAAGCGAGAA 1084
BSNT_02748___ 1085 TTCGCACGATTATAACAGCAGAGCACACCAAAGATGAACTGGATCAGGCG 1134
||.|..|.||.||.||||||||||||||.|||||.||.||.||.|..||.
BPUM_1604___k 1085 TTAGAGCCATCATCACAGCAGAGCACACAAAAGAAGAGCTTGACCGTGCA 1134
BSNT_02748___ 1135 CTTGATG-TCATCGAA-AAGACG-GCAAAGGAGCTCCAGCTATTGTAA-- 1179
| |||.| |||||||| ||||.| |.||| |.||| ||
BPUM_1604___k 1135 C-TGACGATCATCGAAGAAGAAGCGAAAA--------AACTA----AACA 1171
BSNT_02748___ 1179 ----------- 1179
BPUM_1604___k 1172 TACTTGATTGA 1182
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