Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02755 and BPUM_1609
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:25
# Commandline: needle
# -asequence dna-align/BSNT_02755___mutL.1.24716.seq
# -bsequence dna-align/BPUM_1609___mutL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02755___mutL-BPUM_1609___mutL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02755___mutL-BPUM_1609___mutL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02755___mutL
# 2: BPUM_1609___mutL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1984
# Identity: 1399/1984 (70.5%)
# Similarity: 1399/1984 (70.5%)
# Gaps: 176/1984 ( 8.9%)
# Score: 4856.5
#
#
#=======================================
BSNT_02755___ 1 ATGAATGTGGCAAAAGTCATCCAGCTGTCAGATGAGCTTTCAAATAAAAT 50
.|||||||..|.||.|||.|.||.|||||.||.||.||||||||
BPUM_1609___m 1 ------ATGGCAAAGATTATTCAGTTATCCGATGACCTATCCAATAAAAT 44
BSNT_02755___ 51 AGCGGCGGGCGAGGTTGTGGAACGGCCCGCCTCAGTCGTCAAAGAATTGG 100
.||.|||||.||.||.||.||.||.|||||.||.||.||.|||||..|..
BPUM_1609___m 45 TGCTGCGGGTGAAGTAGTCGAGCGTCCCGCTTCCGTTGTAAAAGAGCTTA 94
BSNT_02755___ 101 TGGAAAATGCGATCGACGCTGACAGCACAGTCATTGAAATCGATATTGAG 150
||||||||||.|||||.||....||.|||||..|||||||||||.|.||.
BPUM_1609___m 95 TGGAAAATGCAATCGATGCAAGTAGTACAGTGGTTGAAATCGATGTAGAA 144
BSNT_02755___ 151 GAAGCAGGCCTTGCATCCATTCGGGTCTTGGATAACGGCGAAGGAATGGA 200
||||||||.|||.|.||.|||.|..|..|.||||||||.|..|||||.||
BPUM_1609___m 145 GAAGCAGGTCTTTCCTCTATTAGAATGATTGATAACGGTGTTGGAATCGA 194
BSNT_02755___ 201 GAATGAAGATTGCAAGCGAG-CTTTCCGCCGCCACGCAACGAGTAAAATA 249
....||||||||.||||..| |||||.| |||||.||||||||||||||.
BPUM_1609___m 195 TGCCGAAGATTGTAAGCTCGCCTTTCAG-CGCCATGCAACGAGTAAAATC 243
BSNT_02755___ 250 AAAGATGAAAATGATTTATTCAGGGTGAGAACGCTCGGTTTCAGGGGAGA 299
|||||||||||||||.|.|||.|.||.||||||||.||.|||||||||||
BPUM_1609___m 244 AAAGATGAAAATGATCTGTTCCGTGTCAGAACGCTTGGATTCAGGGGAGA 293
BSNT_02755___ 300 AGCCCTGCCGAGTATCGCGTCAGTCTCTCATCTGGAGATTACAACAAGCA 349
.||.|||||.||||||||.||.|||||||||.||||.||.|.||||||.|
BPUM_1609___m 294 GGCGCTGCCAAGTATCGCATCTGTCTCTCATTTGGAAATGAAAACAAGTA 343
BSNT_02755___ 350 CTGGTGAAGGAGCTGGGACGAAGCTCGTCCTCCAAGGAGGAAACATCATT 399
||||||||||||||||.|||.|.||.||.||.|||||.|||||.||||||
BPUM_1609___m 344 CTGGTGAAGGAGCTGGAACGCACCTTGTGCTGCAAGGTGGAAAGATCATT 393
BSNT_02755___ 400 TCCG-------AATCGCGTTCCTCAAGCAGGAAGGGAACTGAAATTGTCG 442
||.| || ||||..||.|....||.||.||||||||||
BPUM_1609___m 394 TCAGAGAAAAAAA-------CCTCTGGCCGCCGCGGTACCGAAATTGTCG 436
BSNT_02755___ 443 TTTCCAACCTGTTTTTTAACACACCGGCCCGTTTGAAATATATGAAAACC 492
||.|||||.|.||||..||.||.||.|||.|..|.|||||.||||||||.
BPUM_1609___m 437 TTACCAACTTATTTTACAATACGCCTGCCAGACTAAAATACATGAAAACT 486
BSNT_02755___ 493 GTTCATACAGAGCTTGGAAACATTACAGACGTGGTTAACCGTATTGCTCT 542
||||||||.||.|||||.||.||..||||.||.||.||.||.|||||.||
BPUM_1609___m 487 GTTCATACGGAACTTGGCAATATATCAGATGTCGTCAATCGAATTGCACT 536
BSNT_02755___ 543 GGCGCATCCAGAGGTATCGATCCGCCTGCGACATCATGGGAAAAACCTGC 592
|||.||.|||||.||||||||.|||.|.||.||.||.||.|||..|||||
BPUM_1609___m 537 GGCTCACCCAGAAGTATCGATTCGCTTACGTCACCAAGGAAAAGTCCTGC 586
BSNT_02755___ 593 TTCAAACGAACGGAAACGGAGATGTGCGCCATGTACTGGCAGCGATTTAC 642
|.||.|||||.||||||||.||||||||.|||||.||.||.||.|||||.
BPUM_1609___m 587 TACAGACGAATGGAAACGGGGATGTGCGGCATGTGCTTGCGGCTATTTAT 636
BSNT_02755___ 643 GGCACGGCTGTCGCCAAAAAAATGCTTCCGCTGCATGCGAGCTC-CTTGG 691
||.||.||.||.||.|||||||||.|.||.||.||||.|...|| ||| |
BPUM_1609___m 637 GGGACAGCAGTTGCGAAAAAAATGGTGCCACTTCATGTGCAATCACTT-G 685
BSNT_02755___ 692 ATTTTGAAGTAAAGGGATATATCGCCCTCCCAGAGATTACACGGGCGTCG 741
||||||||||.||.|||||||||.||||.|||||..|.|||.||||.||.
BPUM_1609___m 686 ATTTTGAAGTGAAAGGATATATCTCCCTGCCAGAAGTGACAAGGGCATCA 735
BSNT_02755___ 742 AGAAACTATATGTCGTCTGTGGTCAATGGCCGTTACATTAAAAATTTCCC 791
.|.||.||||||||.|||||.||.||||||.|.||..|.||..|||||||
BPUM_1609___m 736 CGGAATTATATGTCTTCTGTAGTAAATGGCAGATATGTGAAGCATTTCCC 785
BSNT_02755___ 792 GCTCGTCAAAGCGGTTCATGAAGGCTATCATACGCTTCTGCCGATCGGAC 841
||||||.||||||||.||||||||.|||||.||||||||||||||.||.|
BPUM_1609___m 786 GCTCGTAAAAGCGGTCCATGAAGGGTATCACACGCTTCTGCCGATTGGTC 835
BSNT_02755___ 842 GCCATCCGATTACTTTTATAGAAATTACGATGGACCCGATTTTAGTCGAT 891
|||||||||||||.|||||.|||||.|.|||||||||.||||||||.|||
BPUM_1609___m 836 GCCATCCGATTACATTTATTGAAATGAAGATGGACCCCATTTTAGTGGAT 885
BSNT_02755___ 892 GTCAATGTGCATCCATCGAAGCTTGAGGTCCGGCTCAGCAAGGAAACA-G 940
||.||.||.|||||.||.||||||||.||..|.||.||.||.| |.|| |
BPUM_1609___m 886 GTGAACGTTCATCCTTCTAAGCTTGAAGTGAGACTAAGTAAAG-AGCAGG 934
BSNT_02755___ 941 AGCTTCATGACTTAATTCGTGACGGAATTAAAGATGTATTTAAACAGCAG 990
|.||||||||..||||.....|.|||||||||||.||||||.||.|.|||
BPUM_1609___m 935 AACTTCATGAGCTAATCAAACAAGGAATTAAAGACGTATTTCAAAAACAG 984
BSNT_02755___ 991 CAGCTGATTCCGAGTGCCCAGCTTCCGAAAAAATCGGCA---CCTGTTAT 1037
||.||.|||||.|||||...|.|.||.||||||.|..|| ||.|..||
BPUM_1609___m 985 CAACTCATTCCAAGTGCTTCGGTGCCAAAAAAAGCACCAATGCCAGCGAT 1034
BSNT_02755___ 1038 CAAAAATGAGCAACAGTTCATAACCTTTGATG----AAAAGCCTCCGGAA 1083
||||||||||||.||.|.|.|||||||||||| |||| ||||
BPUM_1609___m 1035 CAAAAATGAGCAGCAATCCTTAACCTTTGATGCGAAAAAA------GGAA 1078
BSNT_02755___ 1084 AGAAAAGTAC----CGGAAAAAGCGCATGCGCCATCTTATTCACCAATGA 1129
|.|.|| || .|||||.|.||| ||| ||.||||
BPUM_1609___m 1079 ACACAA--ACGAGATGGAAACACCGC-----------TAT---CCTATGA 1112
BSNT_02755___ 1130 AGCTCAGC--------TCAGTCGTGAAAGAGCCGATT------------- 1158
..|..||| ||.||.||..|.|||.|||.|
BPUM_1609___m 1113 GCCGGAGCCTCTCGAATCGGTTGTATACGAGACGAATCAAATGAGCACAT 1162
BSNT_02755___ 1159 ----GATGC----GGAGGAA-------GAATTGCCTCCTCTCC--AATTT 1191
||||| |.||||| || ||.||.||.|| .||||
BPUM_1609___m 1163 ACGGGATGCCTGTGCAGGAAATGACAGGA---GCGTCATCACCCGTATTT 1209
BSNT_02755___ 1192 ------GATGCTCCATCT-ATCGTTGATCAGGAACAAACCCTTGAGGTGT 1234
|||||.|||||| |.|| ||.|||..|| ||||..|
BPUM_1609___m 1210 AGGGAAGATGCGCCATCTGAGCG-TGTTCATAAA---------GAGGAAT 1249
BSNT_02755___ 1235 CCGATGTTTC---AGAAGAACTGCCTGAAACATTTGAG-CAGGAATGCCA 1280
|.|.||.||| .|||.| |||| ||| |||.| .
BPUM_1609___m 1250 CTGCTGCTTCTCTTGAATA------TGAA------GAGTCAGTA-----C 1282
BSNT_02755___ 1281 TGAG-GAACA----GCAGCAGCCAGCGTCT--------GAGCGGGTTCCG 1317
|||| |||.| ||||.||||| |.| ||.||.||||||
BPUM_1609___m 1283 TGAGAGAAGATGATGCAGAAGCCA---TTTCAGAAAACGAACGTGTTCCG 1329
BSNT_02755___ 1318 ATTATGTACCCGATCGGCCAGATGCACGGGACTTATATATTGGCACAAAA 1367
.|.|||||.||.||.||.||.|||||.||.||.|||||.|||||.|||||
BPUM_1609___m 1330 GTCATGTATCCCATTGGGCAAATGCATGGCACATATATTTTGGCTCAAAA 1379
BSNT_02755___ 1368 CGAAAACGGCCTGTATATTATCGACCAGCACGCCGCCCAAGAACGTATTA 1417
.|||...||.||.||||||||.||.|||||.||.||.||.||.||.||.|
BPUM_1609___m 1380 TGAACGAGGGCTTTATATTATTGATCAGCATGCGGCTCAGGAGCGAATCA 1429
BSNT_02755___ 1418 AATATGAGTACTTTCGTGAAAAGGTGGGGGAGGTTGAGCCTGAAGTGCAG 1467
|.||||||||.|.|||.||.||.||.||.|||.|.||.|..||||||||.
BPUM_1609___m 1430 AGTATGAGTATTATCGCGAGAAAGTAGGAGAGATCGAACAGGAAGTGCAA 1479
BSNT_02755___ 1468 GATATGATTGTACCGCTGACGTTCCACTACTCCACAAATG--AGGCTTTG 1515
||.|||.|.||.||..|.||.||.||||||||||.|||.| |.|| ||
BPUM_1609___m 1480 GAAATGCTCGTCCCATTAACATTTCACTACTCCAAAAACGATATGC--TG 1527
BSNT_02755___ 1516 ATTATTGAACAGCACAAACAAGAGCT-----CGAAAGCGTCGGTGTCTTT 1560
|||||||||.||||.| |||||.| ||||| ||.||||||||.
BPUM_1609___m 1528 ATTATTGAAGAGCATA---AAGAGATACTAACGAAA--GTGGGTGTCTTC 1572
BSNT_02755___ 1561 TTAGAGTCATTCGGCTCTAACAGTTACATCGTCCGCTGCCACCCGGCCTG 1610
||||||.|.|||||.||....||.|||||.||.||.|..||.||....||
BPUM_1609___m 1573 TTAGAGCCTTTCGGTTCAGGAAGCTACATTGTTCGGTCGCATCCACAGTG 1622
BSNT_02755___ 1611 GTTTCCAAAGGGAGAAGAAGCAGAGCTTATAGAAGAAATCATTCAGCAGG 1660
|||||||||.||.|||||.||.||.||.||.||||||||.||..||||.|
BPUM_1609___m 1623 GTTTCCAAAAGGGGAAGAGGCTGAACTGATCGAAGAAATTATAGAGCAAG 1672
BSNT_02755___ 1661 TGCTCGACTCCAAAA--ATATAGATATTAAAAAACTCCGCGAGGAAGCGG 1708
||||.| |..|.|| .|.|||||||.||||||.|..|.||.|||||||
BPUM_1609___m 1673 TGCTGG--TTGAGAAGCGTGTAGATATCAAAAAATTAAGAGAAGAAGCGG 1720
BSNT_02755___ 1709 CGATTATGATGAGCTGCAAAGGCTCCATCAAAGCAAATCGCCACCTCAGA 1758
|||||||||||||||||||||||||.||||||||||||||.||..|..||
BPUM_1609___m 1721 CGATTATGATGAGCTGCAAAGGCTCTATCAAAGCAAATCGTCATTTGCGA 1770
BSNT_02755___ 1759 AACGATGAAATCAAAGCGCTTCTGGACGACCTCCGA-AGCACATCAGACC 1807
||.||||||||||||||.||..|.||.||.|||.|| || |||...||||
BPUM_1609___m 1771 AATGATGAAATCAAAGCTCTATTAGATGAACTCAGACAG-ACAAAGGACC 1819
BSNT_02755___ 1808 CATTTACATGCCCGCACGGCCGCCCGATCATCATTCACCACTCGACATAT 1857
|.||.||.||.|||||||||||.||||||||||||||.|||||.||||||
BPUM_1609___m 1820 CCTTCACTTGTCCGCACGGCCGGCCGATCATCATTCATCACTCAACATAT 1869
BSNT_02755___ 1858 GAGATGGAAAAGATGTTCAAACGCGTGATGTAG- 1890
||.|||||.||.|||||.|||||.||.|||| |
BPUM_1609___m 1870 GAAATGGAGAAAATGTTTAAACGGGTCATGT-GA 1902
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