Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02787 and BPUM_1623

See Amino acid alignment / Visit BSNT_02787 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:26
# Commandline: needle
#    -asequence dna-align/BSNT_02787___ymaF.1.24716.seq
#    -bsequence dna-align/BPUM_1623___ymaF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02787___ymaF-BPUM_1623___ymaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02787___ymaF-BPUM_1623___ymaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02787___ymaF
# 2: BPUM_1623___ymaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 433
# Identity:     284/433 (65.6%)
# Similarity:   284/433 (65.6%)
# Gaps:          59/433 (13.6%)
# Score: 869.5
# 
#
#=======================================

BSNT_02787___      1 TTGGGCCTGTATCAGTCTGACTGGTCAAAAGCACCGCCCCACGCACATGC     50
                     .||||||||||||..|||||.|||.|||||...|||||.||.||.|||||
BPUM_1623___y      1 ATGGGCCTGTATCCATCTGATTGGGCAAAATGTCCGCCTCATGCTCATGC     50

BSNT_02787___     51 CTATCATGTCAA-AAC------AACGAGAGAACAGGGCCATTATCATCTC     93
                     .|||.|.| ||| |||      |||   ||||.||   |||||||||.|.
BPUM_1623___y     51 TTATAAAG-CAAGAACGGATGTAAC---AGAAGAG---CATTATCATTTA     93

BSNT_02787___     94 ATTGAAGGGTTTACTCAGCCGGCAAACGGATCAAATACCGATCAGCATAC    143
                     ||.|||||..||.|.||.||.|..||.|||...|.|||||||||||||||
BPUM_1623___y     94 ATAGAAGGTATTTCCCAACCTGTCAATGGAAGCAGTACCGATCAGCATAC    143

BSNT_02787___    144 ACATTACTATACAGGGATCACTTCATTTGAAAACGGCCATTTTCATCGGT    193
                     .|||||||||...||.||||||||.|||||.|..||.|||||.||..|.|
BPUM_1623___y    144 TCATTACTATCGCGGAATCACTTCTTTTGAGAGGGGGCATTTCCACAGAT    193

BSNT_02787___    194 ATTACGGAATCTCAGGGCCGGCGATTCCCTTAGCAGATGGCACACATTAT    243
                     ||||.||.|||.|||||||.|||||.||...||..||.||.||.||||||
BPUM_1623___y    194 ATTATGGTATCACAGGGCCTGCGATACCGAGAGTGGACGGTACGCATTAT    243

BSNT_02787___    244 CATGAAATCGAAGAAACGACATA-TCTGGCTTATAACGA------GCCGA    286
                     ||.||.||.||.|||...||.|| ||| ||.||||||||      .||.|
BPUM_1623___y    244 CACGAGATTGAGGAAGTCACGTATTCT-GCCTATAACGATTCTGTCCCTA    292

BSNT_02787___    287 TTGAGATCCAGTACGGAGGGGTTGTGT---------ACGATCCCGGAGAT    327
                     |     |||| ||.|||||.||.||.|         ||||    ||||..
BPUM_1623___y    293 T-----TCCA-TATGGAGGAGTCGTCTTTAGTCCCGACGA----GGAGCG    332

BSNT_02787___    328 GACAGAAGAAAAACGCAT-CGTCATAACC---TAAAAGGAAAGACAAGGG    373
                     |.|        ||||||| ||    .|||   |.||||||||.|||...|
BPUM_1623___y    333 GCC--------AACGCATACG----CACCGTTTGAAAGGAAAAACATATG    370

BSNT_02787___    374 AAATTGTCGGCAATGAGCCGCTCGGCTGGTAG-    405
                     ||.|.||.||.|||||.||.||.||.|||| | 
BPUM_1623___y    371 AAGTGGTTGGAAATGAACCACTTGGTTGGT-GA    402


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