Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02794 and BPUM_1629
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:26
# Commandline: needle
# -asequence dna-align/BSNT_02794___nrdE.1.24716.seq
# -bsequence dna-align/BPUM_1629___nrdE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02794___nrdE-BPUM_1629___nrdE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02794___nrdE-BPUM_1629___nrdE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02794___nrdE
# 2: BPUM_1629___nrdE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2122
# Identity: 1652/2122 (77.9%)
# Similarity: 1652/2122 (77.9%)
# Gaps: 38/2122 ( 1.8%)
# Score: 6370.5
#
#
#=======================================
BSNT_02794___ 1 TTGTCACAAAATCAAGTGCCAAAATGGATCCAGTTAAATAACGAAATCAT 50
||||||||||||||.||.|||||.|||||.||.|||||||||||.||.||
BPUM_1629___n 1 TTGTCACAAAATCAGGTTCCAAAGTGGATACAATTAAATAACGAGATTAT 50
BSNT_02794___ 51 GATCCAAAAAGATGGAAAATTCCAGTTTGATAAGGATAAAGAGGCTGTAC 100
|||.||||||||.|||||.||.|||||.||||||||.|||||.|||||||
BPUM_1629___n 51 GATTCAAAAAGAAGGAAAGTTTCAGTTCGATAAGGACAAAGAAGCTGTAC 100
BSNT_02794___ 101 ATAGCTATTTTGTAGATTATATCAATCAAAACACAGTCTTCTTTCACGAT 150
||||.|||||.|||||||||||.||||||||||||||||||||||||.|.
BPUM_1629___n 101 ATAGTTATTTCGTAGATTATATTAATCAAAACACAGTCTTCTTTCACAAC 150
BSNT_02794___ 151 TTAAAAGAGAAGCTGGATTATTTGGTTGAAAATCAATACTACGAAGAGGA 200
|||.||||||||.|.|||||.||..|.|||||..|.|||||.||.||.||
BPUM_1629___n 151 TTAGAAGAGAAGATTGATTACTTAATAGAAAACGACTACTATGAGGAAGA 200
BSNT_02794___ 201 ATTCTTAAGCCTTTATTCTTTTGAAGACATTAAAGAAGTGTT-TAAGACA 249
|||.|||||.|..||.....|.|..||.||||||||.||.|| .||| |.
BPUM_1629___n 201 ATTTTTAAGACAGTACAGCATGGCGGATATTAAAGAGGTATTCGAAG-CT 249
BSNT_02794___ 250 GCTTACGCTAAGAAGTTTCGTTTTCCTTCCTTCATGAGTGCGTTTAAATT 299
||.||.||.|||||.|||.|.||.||.||.|||||||||||||||||.||
BPUM_1629___n 250 GCATATGCGAAGAAATTTAGATTCCCATCATTCATGAGTGCGTTTAAGTT 299
BSNT_02794___ 300 CTATAATGACTATGCTTTGAAAACGAATGACAAGAAAAAAATCCTCGAGC 349
.||.||.||||||||..|||||||.|||||.||.||.||||||||.||.|
BPUM_1629___n 300 TTACAACGACTATGCACTGAAAACAAATGATAAAAAGAAAATCCTTGAAC 349
BSNT_02794___ 350 GTTATGAGGACCGGATCTCAATTGTTGCGCTGTTCTTCGCTAACGG--CG 397
|.|||||.|||||.||.|||.||||.|||||.|||||.| ||| .|
BPUM_1629___n 350 GCTATGAAGACCGCATTTCAGTTGTAGCGCTTTTCTTTG----CGGGTGG 395
BSNT_02794___ 398 ACACTGAGAAAGCAAAA------GAATATGTAAACCTGATGATCAATCAA 441
| ||.||||||||| ||.|.||||.|.||||||||||||||.
BPUM_1629___n 396 A----GATAAAGCAAAAGCCCTTGAGTTTGTAGAACTGATGATCAATCAG 441
BSNT_02794___ 442 GAATATCAGCCGAGCACACCGACATTTCTGAACGCCGGCAGAAAACGCCG 491
|||||||||||.||.|||||.|||||..|.||.||.||..|.|||.|.||
BPUM_1629___n 442 GAATATCAGCCAAGTACACCAACATTCTTAAATGCGGGACGTAAAAGACG 491
BSNT_02794___ 492 CGGTGAACTTGTGAGCTGCTTCTTGCTGGAAGTCAATGATTCCTTAAACG 541
||||||.||||||||||||||||||||.|||||.|||||.||.|||||||
BPUM_1629___n 492 CGGTGAGCTTGTGAGCTGCTTCTTGCTTGAAGTGAATGACTCATTAAACG 541
BSNT_02794___ 542 ACATTTCAAGAGCGATCGATATCTCCATGCAGCTTTCTAAACTGGGCGGA 591
|.||||||||||||||.|||||.||.|||||||||||.|||.|.|||||.
BPUM_1629___n 542 ATATTTCAAGAGCGATTGATATTTCAATGCAGCTTTCAAAATTAGGCGGC 591
BSNT_02794___ 592 GGGGTTTC-TCTT-AACCTGTCCAAGCTTCGCGCGAAAGGTGAAGCCATT 639
||.| || .||| |||.||||.||.|||||.||.|||||.||.||.||.
BPUM_1629___n 592 GGCG--TCAGCTTGAACTTGTCAAAACTTCGTGCCAAAGGCGAGGCAATC 639
BSNT_02794___ 640 AAAGATGTTGAGAATGCGACAAAAGGCGTTGTAGGCGTCATGAAGCTTCT 689
|||||||||||.||.|||||||||||.||.||.|||||.|||||||||||
BPUM_1629___n 640 AAAGATGTTGAAAACGCGACAAAAGGTGTCGTCGGCGTGATGAAGCTTCT 689
BSNT_02794___ 690 TGATAACGCGTTCCGTTACGCTGACCAAATGGGACAAAGACAAGGATCCG 739
||||||.||.|||.|.||.||.||.|||||||||||||||||||||||.|
BPUM_1629___n 690 TGATAATGCATTCAGATATGCAGATCAAATGGGACAAAGACAAGGATCAG 739
BSNT_02794___ 740 GCGCGGCGTATTTAAACATTTTCCACCGCGATATCAATGATTTTCTCGAT 789
||...||.||..|.||.|||||||||.|.|||||.||||||||..|.|||
BPUM_1629___n 740 GCAGTGCCTACCTTAATATTTTCCACAGAGATATTAATGATTTCTTAGAT 789
BSNT_02794___ 790 ACGAAAAAGATTTCTGCGGATGAAGATGTGCGTGTCAAAACGCTTTCGAT 839
||.|||||.||.|||||.|||||||||||||||||.|||||..|.||.||
BPUM_1629___n 790 ACAAAAAAAATCTCTGCAGATGAAGATGTGCGTGTGAAAACATTGTCCAT 839
BSNT_02794___ 840 CGGTGTTGTCATTCCGGATAAGTTCGTTGAGCTTGCACGCGAGGACAAAG 889
||||||.|||||.||||||||.||..|||||||||||.|.||.||.|||.
BPUM_1629___n 840 CGGTGTCGTCATCCCGGATAAATTTATTGAGCTTGCAAGAGAAGATAAAA 889
BSNT_02794___ 890 CGGCTTATGTATTCTACCCGCACACGATTTATAAAGAGTACGGCCAGCAC 939
|.|||||....||.||.||||||||..|.||||||||.||.||.|||||.
BPUM_1629___n 890 CAGCTTACACTTTTTATCCGCACACAGTCTATAAAGAATATGGACAGCAT 939
BSNT_02794___ 940 ATGGATGAGATGGACATGAACGAAATGTACGACAAATTTGTCGACAACCC 989
.|.|||||||||||||||.|.||||||||.||..|..||||.||.||.||
BPUM_1629___n 940 CTTGATGAGATGGACATGGAAGAAATGTATGATGAGCTTGTAGAAAATCC 989
BSNT_02794___ 990 TCGGGTGAAAAAGGAAAAAATCAACCCGCGGAAACTGCTTGAAAAACTGG 1039
....||.|||||.||||||.||||.|||.|.||.||.|||||||||.|||
BPUM_1629___n 990 GAAAGTCAAAAAAGAAAAAGTCAATCCGAGAAAGCTTCTTGAAAAATTGG 1039
BSNT_02794___ 1040 CGATGCTTCGTTCTGAATCAGGCTATCCATACATCATGTTCCAAGATAAC 1089
|..|.|||||.||.|||||||||||||||||.|||||||||||||||||.
BPUM_1629___n 1040 CTGTTCTTCGCTCAGAATCAGGCTATCCATATATCATGTTCCAAGATAAT 1089
BSNT_02794___ 1090 GTCAATAAAGTGCATGCGAAT--AACCATATTTCCAAG-GTCAAATTTTC 1136
||.||||.||.|||||| || ||||||||.| ||.| ||.|||||.||
BPUM_1629___n 1090 GTGAATAGAGAGCATGC--ATTAAACCATATCT-CACGAGTGAAATTCTC 1136
BSNT_02794___ 1137 TAACCTTTGCTCTGAAGTGCTGCAGGCATCTCAAGTTTCTTCATACACAG 1186
.|||||||||||.||||||||.||.||.||..|.||.|||||.|||.|.|
BPUM_1629___n 1137 AAACCTTTGCTCAGAAGTGCTTCAAGCTTCAGAGGTCTCTTCTTACGCGG 1186
BSNT_02794___ 1187 ACTATGATGAAGAAGATGAAATCGGTCTGGATATTTCCTGCAACCTGGGT 1236
|||||||..|||||||||||||.|||||.||||||||.||.|||||.|||
BPUM_1629___n 1187 ACTATGACCAAGAAGATGAAATTGGTCTTGATATTTCTTGTAACCTTGGT 1236
BSNT_02794___ 1237 TCGCTTAACATTCTAAATGTCATGGAGCATAAATCAATCGAAAAGACAGT 1286
||..|.||.|||.|.|||||||||.|..|.|||||.||||||||.||.||
BPUM_1629___n 1237 TCATTAAATATTATGAATGTCATGAAAAACAAATCGATCGAAAAAACGGT 1286
BSNT_02794___ 1287 CAAGCTTGCGACAGACTCTTTAACACACGTGTCTGAAACAACTGACATCC 1336
|||.|||||.||||||||..||||.|..||.|||||||||||.||.||.|
BPUM_1629___n 1287 CAAACTTGCAACAGACTCACTAACGCTTGTATCTGAAACAACAGATATTC 1336
BSNT_02794___ 1337 GTAATGCGCCTGCTGTAAGACGGGCAAACAAAGCGATGAAATCAATCGGC 1386
|.|||||.||.|||||..||...||.|||||.|||||||||||||||||.
BPUM_1629___n 1337 GCAATGCACCGGCTGTTCGAAAAGCGAACAAGGCGATGAAATCAATCGGG 1386
BSNT_02794___ 1387 CTCGGTGCTATGAACCTTCACGGCTACCTTGCGCAAAACGGCATTGCGTA 1436
||.||.||.||||||||||||||.||..|.||.||||||...||.||.||
BPUM_1629___n 1387 CTTGGCGCGATGAACCTTCACGGGTATTTGGCTCAAAACCAAATGGCCTA 1436
BSNT_02794___ 1437 TGAAAGTCCGGAAGCGCGTGACTTTGCAAACACGTTCTTTATGATGGTGA 1486
|||||||...|||||..|.||||||||.||.|||||||||||||||||||
BPUM_1629___n 1437 TGAAAGTGAAGAAGCAAGAGACTTTGCGAATACGTTCTTTATGATGGTGA 1486
BSNT_02794___ 1487 ACTTCTACTCCATCCAGCGTTCTGCGGAAATCGCAAAAGAGAAGGGTGAA 1536
|||.|||.||.||..|.||.||....||..|.||||||||.||.||.|||
BPUM_1629___n 1487 ACTACTATTCAATTAAACGCTCAAGTGAGCTTGCAAAAGAAAAAGGAGAA 1536
BSNT_02794___ 1537 ACGTTTGATCAATATGAAGGCTCAACCTATGCGACAGGTGAATACTTTGA 1586
||.||..|||..||||||||.||...|||.||.||.||.||.|||||..|
BPUM_1629___n 1537 ACATTCCATCGTTATGAAGGATCTGGCTACGCAACGGGCGAGTACTTCAA 1586
BSNT_02794___ 1587 CAAATACGTTTCTACTGATTTCTCACCGAAATATGAAAAAATAGC----- 1631
.||||||||....|.|||||||.||||.|||...||||||..|||
BPUM_1629___n 1587 TAAATACGTGGAGAATGATTTCACACCAAAAACGGAAAAAGCAGCCGCAT 1636
BSNT_02794___ 1632 TAATCTGTTTGAAGGTATGCATATCCCGACGACAGAGGACTGGAAAAAGC 1681
|| ||||||||.||||||||.||.||.|.|||.||||||..|...|
BPUM_1629___n 1637 TA-----TTTGAAGGCATGCATATTCCAACAAAAGAAGACTGGGCAGCAC 1681
BSNT_02794___ 1682 TAAAAGCATTTGTGGCTGAACACGGTATGTATCACAGCTACAGATTATGC 1731
|.||||..|||||.||.|||.|.||.|||||.||.||||||.|.|||||.
BPUM_1629___n 1682 TCAAAGACTTTGTAGCGGAAAATGGCATGTACCATAGCTACCGCTTATGT 1731
BSNT_02794___ 1732 ATTGCGCCGACAGGCTCTATCTCATACGTTCAATCAAGTACGGCGTCTGT 1781
|||||.||.||.||.||.||.||.||.||.|||||....||.||.|||||
BPUM_1629___n 1732 ATTGCACCAACTGGTTCCATTTCTTATGTGCAATCGGCAACAGCCTCTGT 1781
BSNT_02794___ 1782 TATGCCGATTATGGAACGCATTGAAGAACGAACATACGGCAACTCAAAAA 1831
||||||.|||||||||||.||.||||||.||||||||||||||...||||
BPUM_1629___n 1782 TATGCCAATTATGGAACGTATCGAAGAAAGAACATACGGCAACAGCAAAA 1831
BSNT_02794___ 1832 CGTACTACCCAATGCCTGGGCTTGCATCTAATAACTGGTTCTTCTATAAA 1881
||||.|||||||||||.||.|||.||.|..|.||||||||||||||||||
BPUM_1629___n 1832 CGTATTACCCAATGCCAGGTCTTTCAGCGCAAAACTGGTTCTTCTATAAA 1881
BSNT_02794___ 1882 GAAGCCTACGATATGGACATGTTCAAGGTTGTGGATATGATCGCCACTAT 1931
|||||.|||||||||||.|||||.||.||.||.|||||||||||.||.||
BPUM_1629___n 1882 GAAGCGTACGATATGGATATGTTTAAAGTAGTCGATATGATCGCAACGAT 1931
BSNT_02794___ 1932 CCAGCAGCACATTGATCAGGGAATCAGCTTTACATTGTTCTTAAAAGACA 1981
.|||||||||.|.|||||.|||||||||||||||.|.|||.|.|||||.|
BPUM_1629___n 1932 TCAGCAGCACGTCGATCAAGGAATCAGCTTTACACTATTCCTGAAAGATA 1981
BSNT_02794___ 1982 CAATGACGACCCGTGATTTAAACCGAATCGATCTGTATGCACATCATAGA 2031
|.||||||||.|||||..|||||||.|||||||||||||||||.||||.|
BPUM_1629___n 1982 CGATGACGACGCGTGACCTAAACCGCATCGATCTGTATGCACACCATAAA 2031
BSNT_02794___ 2032 GGTATTAAAACCATTTACTATGCAAGAACGAAAGATACTGGGCAAGATAG 2081
||.||||||||..||||.|||||.||||||||.|||||.|||||.||..|
BPUM_1629___n 2032 GGCATTAAAACACTTTATTATGCGAGAACGAAGGATACAGGGCAGGAAGG 2081
BSNT_02794___ 2082 CTGCCTTTCTTGTGTTGTTTGA 2103
|||.||||||||||||||||||
BPUM_1629___n 2082 CTGTCTTTCTTGTGTTGTTTGA 2103
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