Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02799 and BPUM_1634
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_02799.1.24716.seq
# -bsequence dna-align/BPUM_1634.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02799-BPUM_1634.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02799-BPUM_1634.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02799
# 2: BPUM_1634
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1440
# Identity: 903/1440 (62.7%)
# Similarity: 903/1440 (62.7%)
# Gaps: 234/1440 (16.2%)
# Score: 2915.0
#
#
#=======================================
BSNT_02799 1 TTGAGAGGTCTGTTTTTTGCTCGTATTTCCGCTTTTCAAAGCAATCGATT 50
BPUM_1634 0 -------------------------------------------------- 0
BSNT_02799 51 TGTGGTATACACATGCAGGGTTTGGTATGATAATACTACTGCCCAATATG 100
BPUM_1634 0 -------------------------------------------------- 0
BSNT_02799 101 CAAAAGAAAGGAACATCCATTTGAACGAACAAGAAACGATTCAGGAGAAA 150
|||||.|||||.||||.|| || ||.|||
BPUM_1634 1 --------------------TTGAATGAACATGAAATGA--CA-GAAAAA 27
BSNT_02799 151 GCCATTTTAGTCGGATGTCAGCTGCCGCATATCACGGATGAGCATTTTGA 200
||.||..|.|||||.|||||..||||||||.||||||||||.|..|||.|
BPUM_1634 28 GCGATCCTTGTCGGCTGTCAATTGCCGCATGTCACGGATGAACGCTTTCA 77
BSNT_02799 201 AAATTCTATGGAAGAGCTAGCATCTCTGACGAAAACAGCAGACGGAAAAG 250
|.|.||.||||||||..||||.||..|.||.|||||.||.|.|||..|||
BPUM_1634 78 ATACTCAATGGAAGAATTAGCTTCCTTAACCAAAACGGCTGGCGGTGAAG 127
BSNT_02799 251 TACTGACCAGCG---TCACACAAAAACGGAACAGGGCTGACGCCGCTACA 297
||| .||||| |.||.||.||..|.||.||....|||..|||.|||
BPUM_1634 128 --CTG-TCAGCGTAATGACGCAGAAGAGAAATAGACAAGACAGCGCAACA 174
BSNT_02799 298 TATATAGGAAAAGGGAAGGTAGAAGAGC-TGAAG-GCACTG-GTGGAAGA 344
|||||.||.||||||||.|||||||||| ||||| ||..|| |.||||
BPUM_1634 175 TATATTGGTAAAGGGAAAGTAGAAGAGCTTGAAGTGCTTTGCGAGGAA-- 222
BSNT_02799 345 GCTT-GAAGCTGATCTCCTCATCTTTAATGATGAACTGTCGCCAAGTCAG 393
|| |||..||||.||.|.||.|||||.||.||||||||.||.||||||
BPUM_1634 223 --TTCGAATGTGATGTCATTATTTTTAACGACGAACTGTCTCCGAGTCAG 270
BSNT_02799 394 CTGAAGTCATTGGCAACAGCAATTGAAGTGAAGATGATTGACCGCACGCA 443
||.||.||.||||||||.||..|.||.|||||.||.||.||.||.||.||
BPUM_1634 271 CTAAAATCTTTGGCAACTGCCTTAGATGTGAAAATTATCGATCGGACACA 320
BSNT_02799 444 ATTGATATTAGATATTTTTGCAAAGCGGGCGAGAACGAGAGAAGGCAAAC 493
||||||.||.||.||.||||||||..|.|||.|.||.|||||.||.||.|
BPUM_1634 321 ATTGATTTTGGACATCTTTGCAAAAAGAGCGCGGACAAGAGAGGGGAAGC 370
BSNT_02799 494 TTCAAATTGAGCTGGCTCAGCTGCAATATGCACTGCCGCGTCTGACGGGA 543
|.|||||.|||||.||||||||.||.|||||..|||||.|.||.|..|||
BPUM_1634 371 TACAAATAGAGCTTGCTCAGCTTCAGTATGCCTTGCCGAGACTAAGCGGA 420
BSNT_02799 544 CAAGGGATCAATCTCTCCCGGCAAGGCGGAGGAATTGGGGCAAGAGGTCC 593
||||||||||..|||||..|.|||||.||.||||||||.|||||||||||
BPUM_1634 421 CAAGGGATCAGCCTCTCAAGACAAGGAGGCGGAATTGGCGCAAGAGGTCC 470
BSNT_02799 594 CGGGGAAACGAAACTGGAAACCGACCGCCGCCATATCAGAAATCGCATTC 643
.||.|||||.|||||.|||||.||..|.||||||||..||||.||.||||
BPUM_1634 471 AGGTGAAACAAAACTTGAAACAGATAGACGCCATATTCGAAACCGTATTC 520
BSNT_02799 644 ATGAAATCAACACACAGCTTTCCACTGTCA---TTCGCCATAGAAGCCGA 690
|||||||.|||...||..|.||.||.|||| ..|.||.||.|| ||
BPUM_1634 521 ATGAAATTAACGGGCAATTATCTACCGTCAAAGAACACCGTACAA---GA 567
BSNT_02799 691 TACCGTGAAAGAAGAAAGAAAAACGGTGTGCTTCAAATTGCGCTTGTCGG 740
|||||.|||.|..|.||||||||.||||||.|.|||||.||..||||.||
BPUM_1634 568 TACCGGGAACGCCGGAAGAAAAATGGTGTGTTCCAAATCGCCATTGTTGG 617
BSNT_02799 741 CTATACAAACGCAGGGAAATCAACATGGTTCAACCGCCTGACGAG-TGCT 789
.|||||.||.||.||.|||||.||.|.|||.||||...|.|| || |||.
BPUM_1634 618 GTATACGAATGCCGGAAAATCCACTTTGTTTAACCAGTTAAC-AGATGCA 666
BSNT_02799 790 GACAGCTATGAAGAAGATCTCCTGTTTGCCACGCTGGACCCGATGACCAG 839
||.||..|||||||.|||.|.||||||||.||.||.||.||.|||||..|
BPUM_1634 667 GATAGTCATGAAGAGGATTTGCTGTTTGCGACACTTGATCCAATGACACG 716
BSNT_02799 840 AAAAATGGTCCTGCCA--AGC----GGCTACAGTGTTCTTCTTTCAGATA 883
.||.| ||.|| ||| |||||||||||.||..|||||||.|
BPUM_1634 717 TAAGA------TGACATTAGCATCTGGCTACAGTGTGCTCATTTCAGACA 760
BSNT_02799 884 CAGTAGGATTTATTCAGGATCTTCCGACGACATTGATTGCTGCATTCCGC 933
|.||.||.|||||.||.||.||.||.||.|||.|.|||||.|||||.||.
BPUM_1634 761 CCGTTGGTTTTATCCAAGACCTCCCAACAACACTCATTGCGGCATTTCGT 810
BSNT_02799 934 TCAACGCTTGAGGAAGTAAAAGAAGCGGATTTGATCCTGCATTTAATTGA 983
||.||.|||||.|||||.||.|||||.||||...|.||.|||.|.||.||
BPUM_1634 811 TCCACTCTTGAAGAAGTGAAGGAAGCCGATTATTTGCTTCATGTCATCGA 860
BSNT_02799 984 TTCTTCAAATGAGGATTATGCGGGACATGAAAAAACAGTGCTTCGGCTGC 1033
||||||.|||||||||||.|..|||||.|||..|||.||.|.|..|.||.
BPUM_1634 861 TTCTTCTAATGAGGATTACGAAGGACACGAACGAACGGTTCATGAGTTGT 910
BSNT_02799 1034 TTGAGGAGCTTGAAGCAGATGATATCCCGATGCTGACGGCTTACAATAAA 1083
|.|||||..|.|||||||||..|||.||.||||||||||.|||.||.|||
BPUM_1634 911 TAGAGGAATTAGAAGCAGATCGTATTCCAATGCTGACGGTTTATAACAAA 960
BSNT_02799 1084 CGTGATCAAAAACTG-CCTGATTTTATACCGTC-------CGCCGGAAGG 1125
...|||| |||.|.| ||.|||||.||.||.|| |.|||
BPUM_1634 961 GAAGATC-AAATCAGACCGGATTTCATCCCATCTTCAAAGCACCG----- 1004
BSNT_02799 1126 GATCACATTATGGTCAGTGCGAAATTTGAGGACGACGCTGCAGCCTTTAA 1175
|||..|..|..||||||||| ||||| |.|| |
BPUM_1634 1005 --TCATCTGTTAATCAGTGCGA--------GACGA----GAAG------A 1034
BSNT_02799 1176 AG-----AAGCGATTCAGCGC-----TATTTGCGCCAAGAACTG----TT 1211
|| ||||||||.|..|| ||.|.|| ||||||| ..
BPUM_1634 1035 AGATGTCAAGCGATTAAAAGCGGATATAATGGC----AGAACTGAAACAA 1080
BSNT_02799 1212 AACGTCTTTTGAAGC----ACATGTG------CCGGCAAGTGAAGGGAAG 1251
||| .||||.|||| .|||||| ||.||...||||||.|||
BPUM_1634 1081 AAC--TTTTTAAAGCCATATCATGTGAAAATCCCAGCGTATGAAGGAAAG 1128
BSNT_02799 1252 CTCCTTTCCAGAATCAAATCGGAAACGATGGTAG-ACCGCTTCTATTTTA 1300
|||.|.||...|.|.|||||.||||||.|.|||| |.|.||...||||.|
BPUM_1634 1129 CTCATCTCTGCATTAAAATCAGAAACGCTTGTAGAATCACTAGAATTTCA 1178
BSNT_02799 1301 ATGAAGAAAATGAACAGTATGACATATCCGGCTAT----GTCCAAGAAGA 1346
| .|||||...||||..||||||||..||||.|.| || ||.||
BPUM_1634 1179 A-AAAGAAGCAGAACTTTATGACATCACCGGATTTAGTGGT----GAGGA 1223
BSNT_02799 1347 GCAAAGTATCATCGGTGAATTAAAGAAGTATATGTAG--- 1383
|||.|..||..|.|||.||.|.|||||||||||||.|
BPUM_1634 1224 GCAGACCATATTAGGTCAAATCAAGAAGTATATGTTGTAA 1263
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