Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00755 and BPUM_1668
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:31
# Commandline: needle
# -asequence dna-align/BSNT_00755.1.24716.seq
# -bsequence dna-align/BPUM_1668___ydaT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00755-BPUM_1668___ydaT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00755-BPUM_1668___ydaT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00755
# 2: BPUM_1668___ydaT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 548
# Identity: 311/548 (56.8%)
# Similarity: 311/548 (56.8%)
# Gaps: 139/548 (25.4%)
# Score: 886.0
#
#
#=======================================
BSNT_00755 1 ATGCGTTTTTATTTTTCACCTGCGGGTACCATTTTTATAAAAGGAAAAGG 50
BPUM_1668___y 0 -------------------------------------------------- 0
BSNT_00755 51 AGTGATAGACATGCCTTGGTCGATGAAGGATTATCCTGCTTCATTAAAAA 100
|||||||||.|||||||.||||||||.|||||||| ..|
BPUM_1668___y 1 ----------ATGCCTTGGACGATGAATGATTATCCGGCTTCATT--TCA 38
BSNT_00755 101 ATCTTGAGAAGCCG----GTGAGAAAAAAGGCGATAGACATTGCGAATGC 146
|||.|.||| ||| .|..|||||||.||..|.||.|||||.|||..
BPUM_1668___y 39 ATCGTTAGA--CCGCATTATTCGAAAAAAAGCACTTGAGATTGCTAATAA 86
BSNT_00755 147 GATGATTGATGAAGGCTATGAGGAAGAG-CGCGCGATTCCAATTGCGACA 195
.|||||..|.|||||||||||.||| || .|.||.|||||||||||.|..
BPUM_1668___y 87 AATGATACAGGAAGGCTATGACGAA-AGTAGAGCCATTCCAATTGCAATC 135
BSNT_00755 196 AGCAAAGCGAAGGAATGGGCGGAAAACG-CCTCTACAGATGAA----ATT 240
||..|||||||.|||| ||||||.| .|.|.||.|| ||| ||.
BPUM_1668___y 136 AGTCAAGCGAAAGAAT----GGAAAAAGAACGCAACGGA-GAAAGAGATC 180
BSNT_00755 241 GATGATTTC-CTGACGCATGATGATGAGACAGAACGCGATGCTGATCCAA 289
||.|||||| |.| |.||||.|..||.| ||||.|| || .||
BPUM_1668___y 181 GAGGATTTCACAG-CTCATGGTTCTGTG-----ACGCCAT-CT----AAA 219
BSNT_00755 290 G-CAGCGGCAGCG---GCCCCGAGCTCATGAATAAAGCAGAGCATGTTAT 335
| ||||.||..|| |.||.||.||.|||.||.|.||..|||||||..|
BPUM_1668___y 220 GACAGCAGCTCCGCAAGACCAGAACTTATGGATCATGCGCAGCATGTCGT 269
BSNT_00755 336 TAAGCATAAAAAAGGCTGGGCAG-TCAAAGCCGAGGGCGCCAAACGCGTG 384
.||.||..||.||||||||||.| ||||| |.|||...||.|||||.|..
BPUM_1668___y 270 CAAACACGAAGAAGGCTGGGCGGTTCAAA-CAGAGAAAGCAAAACGAGCA 318
BSNT_00755 385 TCTGAAATCAAGGATACAAAGAAAGAAGCGATTGAACGGGCAAAGGAAAT 434
..|||.|||||.||.||.||..|||||||.||.||.|||||||||||.||
BPUM_1668___y 319 AGTGAGATCAAAGAAACGAAACAAGAAGCAATCGACCGGGCAAAGGAGAT 368
BSNT_00755 435 CGCGGCGCATAAAGGCACTGAGGT-CATTGTT---CATTTAGCTGACGGC 480
.||..|..|||||||.||| | |.||||| |||
BPUM_1668___y 369 TGCCTCTAATAAAGGGACT----TCCGTTGTTATCCAT------------ 402
BSNT_00755 481 AGTGTGCAGAGA-----------AAGA----TTAAAACAGGATCATAA 513
.|||.||| |||| |||||||.|.| ||||
BPUM_1668___y 403 ----AGCAAAGATGGGAACATTCAAGACGTGTTAAAACCGCA--ATAA 444
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