Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03166 and BPUM_1683
See
Amino acid alignment /
Visit
BSNT_03166 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_03166___yojH.1.24716.seq
# -bsequence dna-align/BPUM_1683___yojH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03166___yojH-BPUM_1683___yojH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03166___yojH-BPUM_1683___yojH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03166___yojH
# 2: BPUM_1683___yojH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 959
# Identity: 554/959 (57.8%)
# Similarity: 554/959 (57.8%)
# Gaps: 220/959 (22.9%)
# Score: 1340.5
#
#
#=======================================
BSNT_03166___ 1 ATGGCAAAAAACAAAAAATTATTCGAGTATCTTTC--CCAGCATGC--GG 46
||||..||.|||.....|||||.|||.|| |||| .||.||||| .|
BPUM_1683___y 1 ATGGATAAGAACCGTGCATTATACGACTA--TTTCATGCAACATGCAGAG 48
BSNT_03166___ 47 AAACCATCAGTTCAACATGGTATGAAACAATCGAGGA-GACTGATCCCAA 95
|||| |.|.|..|||.||||||||..||||.||||| || ||||||..|
BPUM_1683___y 49 AAAC--TGACTGAAACTTGGTATGATTCAATTGAGGATGA-TGATCCAGA 95
BSNT_03166___ 96 TTCCATTTATGCCTCAACAGACCCTGTT-----GTCAT-TCACAATTTAA 139
.||.||.|||...|||||||| || .|||| |||.|..|.||
BPUM_1683___y 96 ATCAATCTATCGTTCAACAGA-----TTCCAGCATCATATCAGAGCTGAA 140
BSNT_03166___ 140 AGAGCCAGAATC-------TT----GCCTTTAACTATAAAATAAACCGTA 178
| .|.||.|||| || ||.||| |||| |||.
BPUM_1683___y 141 A-CGGCAAAATCAAGATTATTACCAGCATTT---TATA--------CGTG 178
BSNT_03166___ 179 TTTTTATAGATGATGAGGACGTATACTTGCCTATACTGA----AAGAA-T 223
...||||.||.|| .|.||||||| ||.| ||||||| ||||| |
BPUM_1683___y 179 CGCTTATTGAAGA-CAAGACGTAT--TTAC--ATACTGAGTTTAAGAAGT 223
BSNT_03166___ 224 GGGCTTTTGAAG--TCACACAG-GATCAAGAGCATTTAAAAACTCCTATC 270
|| |.||||| |.|..||| ||||...||||||||||.|| .|
BPUM_1683___y 224 GG---TCTGAAGACTTAGCCAGTGATCCGAAGCATTTAAACAC-----AC 265
BSNT_03166___ 271 CACTATATTATTCGGGAGTTTGTCAGAGTGAGAGATTTATATGTTTCCTA 320
||.||.||||| ||| |||||||| .||.|||| |||
BPUM_1683___y 266 CATTAGATTAT------GTT-------GTGAGAGA-ATACATGT---CTA 298
BSNT_03166___ 321 TGTGAAAGAATTTGTCCATCTCAATCAGGATACTGTGAAAAG------CG 364
.|.|||| |.|.||||.|| || ||| |.||||| ..
BPUM_1683___y 299 -ATCAAAG-AGTGGTCCTTC---AT-----TAC--TTAAAAGAATTTATT 336
BSNT_03166___ 365 AAGAAGC-CGAAGACCTG-------TATCACGCCC-------TTAT---- 395
|||.||| |.|||| || ||| .|.|| ||||
BPUM_1683___y 337 AAGCAGCGCCAAGA--TGATATTGATAT--TGACCGCATCTTTTATTGGT 382
BSNT_03166___ 396 -------------AAAAGCGTTTGATCTTGTGATTCATATTTTTATAGAA 432
|.|.||.|||.||.||...||||||.|.||.||..|.
BPUM_1683___y 383 ATGATTTAATTTCAGAGGCATTTAATATTTCAATTCATGTGTTCATTCAG 432
BSNT_03166___ 433 GAAATGTAC---AAAAACACAAGCCTTC-----AGCTTCAGGCCCAAAAA 474
.|| ||| |||||.|||| | ||||...|||.||||.|
BPUM_1683___y 433 CAA---TACGTGAAAAATACAA-----CGAAGAAGCTCGTGGCACAAAGA 474
BSNT_03166___ 475 GATATGA-TTACTGAATTGAGCGCTCCGGTCATCGTGCTGTTTCACAGCG 523
||.|||| |||| ||..|.||..|.||.||||| |||||.|.|..|
BPUM_1683___y 475 GACATGATTTAC-GAGCTAAGTTCACCTGTCAT-----TGTTTTAAAAAG 518
BSNT_03166___ 524 TCGGACTGC-----TGCCTTTAATCGGAGATATTGATACAGTCCGCGCCA 568
.|..|.||| ||||.|||.|.||.|||||||||||||...|.||.|
BPUM_1683___y 519 CCATATTGCGTTATTGCCGTTAGTAGGTGATATTGATACAGCGAGAGCAA 568
BSNT_03166___ 569 AGCTGATTATGGAAAACACACTGCATCAATGTGCGAAAAAAAAGGTG-AC 617
||.|.|||.|.|||||.||.|||.|.|| ||||..|.||||||||| .|
BPUM_1683___y 569 AGATTATTTTAGAAAATACGCTGAAACA--GTGCTCACAAAAAGGTGTGC 616
BSNT_03166___ 618 A-CAACTGTATATTGATTTGTCAGGAGTAGCTGTGATTGATACGATGGTT 666
| ||..|.|.|||||||||.||.||.||.|...|.||||||||.|||||.
BPUM_1683___y 617 AGCATTTATGTATTGATTTATCGGGCGTTGTCATTATTGATACAATGGTG 666
BSNT_03166___ 667 GCCCATCAGC-------TGTTC-AGTCTGATTGAGGCGCTTCGTTTAATC 708
|| ||||| ||.|| .|||..|| |.|||||.|||||.
BPUM_1683___y 667 GC---TCAGCAAATTTTTGATCTTGTCACAT-----CACTTCGGTTAATT 708
BSNT_03166___ 709 GGTGTTTCTTCAACTTTGTCTGGAATCCGTCCGGAAATCGCGCAAACAGC 758
||.||.....||||..|.||.||||||.|.||.|||||.||.|||||.||
BPUM_1683___y 709 GGAGTAGAGACAACCATTTCAGGAATCAGACCAGAAATTGCCCAAACCGC 758
BSNT_03166___ 759 GGTTCAGCTAGGTTTGTCTTTCGAAGGTATTTC--------------CTT 794
.||.|||||.||..| ||.||..||.|.||||| |||
BPUM_1683___y 759 TGTACAGCTCGGGCT-TCCTTTTAATGAATTTCGCACGGCAGCATCACTT 807
BSNT_03166___ 795 GAGATCCACTCTCGCTTCAGCAATTGCATCGGACTTAAAATT----AAAA 840
| |||.|||.|.|| |..|||| ||||.||..|| ||
BPUM_1683___y 808 G-------CTCACGCATTAG--AACGCAT--GACTGAATTTTCTCCAA-- 844
BSNT_03166___ 841 AAGGTATAA 849
|||||
BPUM_1683___y 845 ----TATAA 849
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.