Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02956 and BPUM_1686

See Amino acid alignment / Visit BSNT_02956 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:29
# Commandline: needle
#    -asequence dna-align/BSNT_02956___lexA.1.24716.seq
#    -bsequence dna-align/BPUM_1686___lexA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02956___lexA-BPUM_1686___lexA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02956___lexA-BPUM_1686___lexA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02956___lexA
# 2: BPUM_1686___lexA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 638
# Identity:     470/638 (73.7%)
# Similarity:   470/638 (73.7%)
# Gaps:          37/638 ( 5.8%)
# Score: 1712.5
# 
#
#=======================================

BSNT_02956___      1 ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGC     50
                     ||||||||||||||||||||.|||||.||||||||....||.||.||||.
BPUM_1686___l      1 ATGACGAAGCTATCAAAAAGACAACTCGATATCCTGACATTCATCAAAGA     50

BSNT_02956___     51 AGAGGTTAAATCAAAAGGATATCCGCCTTCCGTGAGAGAGATCGGAGAGG    100
                     |||.||.|||...||.||.|||||.||.|||||..|.||.||.|||||.|
BPUM_1686___l     51 AGAAGTAAAAAGTAAGGGCTATCCCCCATCCGTTCGTGAAATTGGAGAAG    100

BSNT_02956___    101 CTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTG    150
                     |||||||.||.||.|||||.||.||.||.||.||.|||||.||..|..|.
BPUM_1686___l    101 CTGTCGGTCTAGCATCCAGTTCAACGGTTCATGGACATTTAGCTAGACTA    150

BSNT_02956___    151 GAAACAAAAGGGC-TGATCAGACGAGATCCGACAAAACCAAGAGCAATAG    199
                     ||||| .|||||| |.||.|||.||||.|||||||||||.|||||.||.|
BPUM_1686___l    151 GAAAC-GAAGGGCTTAATAAGAAGAGACCCGACAAAACCTAGAGCGATCG    199

BSNT_02956___    200 AAATTCTTGATGAA---GAAGTAGACATTCCGCAAAGCCAG----GTCGT    242
                     ||.|.||.||||||   |||.|..|.||||  |||||  ||    ||..|
BPUM_1686___l    200 AAGTACTAGATGAAGAGGAATTGAATATTC--CAAAG--AGTGCTGTAAT    245

BSNT_02956___    243 TAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAG    292
                     .||.|||||.||||||||.|||||.||.||.||.|..||||||||.||.|
BPUM_1686___l    246 GAACGTACCAGTCATCGGAAAAGTAACAGCAGGCTTGCCTATTACGGCTG    295

BSNT_02956___    293 TAGAAAATATTGAAGAATATTTTCCGCTCCCAGA--------CCGCATGG    334
                     |.||.|||.|.||||||||.||.||.||.||.||        |.|||   
BPUM_1686___l    296 TTGAGAATGTAGAAGAATACTTCCCTCTTCCTGAAACTTTTGCAGCA---    342

BSNT_02956___    335 TTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATG    384
                          ||.||.||.||.||.||||||||.||.|||||||||||.||||||
BPUM_1686___l    343 -----CCGGATGAACAAGTGTTTATGCTTGAAATTATGGGAGAAAGTATG    387

BSNT_02956___    385 ATAGATGCTGGTATTCTCGATAAGGACTATGTCAT----CGTTAAACAGC    430
                     ||.|||||.||.|||.|.||.||||||||||||||    |||    ||||
BPUM_1686___l    388 ATTGATGCAGGCATTTTGGACAAGGACTATGTCATTGTGCGT----CAGC    433

BSNT_02956___    431 AAAACACAGCGAACAATGGGGAAATTGTAGTTGCAATGACAGAAGATGAT    480
                     |||.|||.||.||||||||.||.|||||.||.||.||||||||.||.|||
BPUM_1686___l    434 AAAGCACTGCTAACAATGGAGATATTGTCGTCGCCATGACAGAGGAAGAT    483

BSNT_02956___    481 GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCA    530
                     |||||.||.||.|||||.||.||||||||.|||||.|||.||.|.||.||
BPUM_1686___l    484 GAAGCGACAGTGAAACGTTTTTATAAAGAAGATACACACTTTAGATTACA    533

BSNT_02956___    531 GCCTGAGAACCCAACGATGGAACCTATCATTTTGCAGAATGTCAGCATTC    580
                     |||.||.||||||.|.||||||||.||.|||||.||||||||.||.||.|
BPUM_1686___l    534 GCCAGAAAACCCATCTATGGAACCGATTATTTTACAGAATGTAAGTATAC    583

BSNT_02956___    581 TAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA    618
                     ||||.||||||||||||||.||.||||...|.||.|||
BPUM_1686___l    584 TAGGTAAAGTGATTGGCGTATTTAGAAATATTCACTAA    621


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