Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02958 and BPUM_1688
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_02958___yneB.1.24716.seq
# -bsequence dna-align/BPUM_1688___yneB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02958___yneB-BPUM_1688___yneB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02958___yneB-BPUM_1688___yneB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02958___yneB
# 2: BPUM_1688___yneB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 693
# Identity: 446/693 (64.4%)
# Similarity: 446/693 (64.4%)
# Gaps: 84/693 (12.1%)
# Score: 1407.0
#
#
#=======================================
BSNT_02958___ 1 ATGAAAGCACTCATTTATGCCCGTGTAAGCACAAATAAAGAACAGCAGGA 50
|||||.|||.||||.|||||..|.||||||||....||||||.|||||||
BPUM_1688___y 1 ATGAATGCAATCATCTATGCGAGAGTAAGCACTGTCAAAGAAGAGCAGGA 50
BSNT_02958___ 51 AACGTCATTAAAGCGGCAGGAGGAGGA---GCTTACGGCCATTGCAGCGG 97
|||.||..|.|||.|.||.||.||.|| ||| |||..|.||.||..
BPUM_1688___y 51 AACCTCGCTGAAGAGACAAGAAGAAGAATTGCT---GGCTTTAGCTGCTA 97
BSNT_02958___ 98 AGAACGACATGGAAGTGGTCAAAGTGATTTCAGAAAAAGCCAGCGGATAT 147
.|.||.|.|||.|.|||||.|||||.|||..|||||||||.|||||.|||
BPUM_1688___y 98 TGCACAAGATGAATGTGGTTAAAGTTATTAAAGAAAAAGCAAGCGGGTAT 147
BSNT_02958___ 148 GAAATGGATCGGGATGGTGTATTTGAGCTGCTTGATGAGATTAAGAACGC 197
||..|.|||||.||||||||.|||||..||||.|.| |.|.|||||
BPUM_1688___y 148 GATCTAGATCGCGATGGTGTGTTTGATATGCTAGCT-ACACTAAGA---- 192
BSNT_02958___ 198 TGG-------AATTGATGTCATTTTGGTTCAGGATGAGACAAGGCTCGGA 240
| ||||||||...||.|..|.||||||||.|||.|.||||||
BPUM_1688___y 193 --GAAAAGTCAATTGATGCTGTTCTTATCCAGGATGAAACACGTCTCGGA 240
BSNT_02958___ 241 CGGGGAAACGCAAAAATCGCACTGCTTCATTGCATTTATAGAGAAGGTGT 290
.|.|||.|.||||||||.||.||.||||||||..|||.||.||||..|||
BPUM_1688___y 241 AGAGGACAAGCAAAAATTGCGCTTCTTCATTGTCTTTTTAAAGAAAATGT 290
BSNT_02958___ 291 GAAAGTCTATACAACGGCTCATAGAGGTGAACTGGAGTTATCGGAGGCTG 340
||||||.||.|..|||..|||||||||.||.||.|||.|.||.||.||||
BPUM_1688___y 291 GAAAGTGTACAGTACGTTTCATAGAGGGGAGCTTGAGCTTTCAGAAGCTG 340
BSNT_02958___ 341 ACTCAATGGTCTTGGAAATCGTCAGCATTGTGGAAGAGTATCAGCGAAAG 390
|...||||||..|.||.||||||.|..|.||.|||||.|||||.|||||.
BPUM_1688___y 341 ATGAAATGGTGATTGAGATCGTCGGAGTCGTTGAAGAATATCAACGAAAA 390
BSNT_02958___ 391 ATTCACAACATGAAAATCAGACGGGGAATGAAACGTGCAGTAAAAAACGG 440
|||||.|||.|||||||||..||||||||||.|.|.||.|||.||..|||
BPUM_1688___y 391 ATTCATAACCTGAAAATCAAGCGGGGAATGAGAAGAGCCGTAGAAGGCGG 440
BSNT_02958___ 441 TTTTAAACCGCAAAAAAACTTAAAAAACCAACATGGGAACA--------- 481
.|.|.|.||..||...||.||||||.|.|| |||.||
BPUM_1688___y 441 GTATCAGCCCGAACTGAATTTAAAACAGCA-----GGATCATGCGCCTGG 485
BSNT_02958___ 482 --GTGGAAAAGAAAAA----ATAGAGGTGCCAATCTCTGAGATCGTCCGC 525
||| | ||.||.|||||.||.||.||.||.||.||.
BPUM_1688___y 486 CCGTG----------AGCGTATTGAAGTGCCGATTTCAGAAATTGTTCGA 525
BSNT_02958___ 526 CTAAGAGCGAATAAACTGACGTTTGCTGAAATCGCGGCTACCCT------ 569
.|||||..|||.||..||||.||.||.||||||||.||.||.||
BPUM_1688___y 526 TTAAGAAAGAACAACATGACCTTCGCCGAAATCGCAGCAACTCTTCAGGC 575
BSNT_02958___ 570 AAGAGGGTTTGGCTATGATGTCTCTAAAGCAACCGTTCACCGGCGTTTTC 619
|..|||.|| |||..|.||.||||||||.|||||..|..|.|.||
BPUM_1688___y 576 ACTAGGTTT------TGACATTTCAAAAGCAACGGTTCATAGAAGGTATC 619
BSNT_02958___ 620 AGGAATACATAGAGAATGAAGAGACAGCAGAGTGA-------- 654
|.|||| ||||| |.|| |..|||
BPUM_1688___y 620 AAGAAT---------ATGAA---AAAG--GTTTGATCACCTAA 648
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