Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02960 and BPUM_1690
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_02960___tkt.1.24716.seq
# -bsequence dna-align/BPUM_1690___tkt.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02960___tkt-BPUM_1690___tkt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02960___tkt-BPUM_1690___tkt.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02960___tkt
# 2: BPUM_1690___tkt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2055
# Identity: 1529/2055 (74.4%)
# Similarity: 1529/2055 (74.4%)
# Gaps: 102/2055 ( 5.0%)
# Score: 5594.0
#
#
#=======================================
BSNT_02960___ 1 ATGGATACAATTGAAAAGAAATCAGTTGCTACCATTCGCACACTGTCAAT 50
|||||.||.||||||..||||||..||||.||.||.||.||.||.||.||
BPUM_1690___t 1 ATGGAAACGATTGAATTGAAATCTATTGCAACAATACGTACTCTCTCCAT 50
BSNT_02960___ 51 AGACGCTATTGAAAAAGCAAATTCTGGTCACCCAGGGATGCCGATGGGAG 100
||||||.|||||||||||.|||||.||||||||.||.|||||||||||.|
BPUM_1690___t 51 AGACGCAATTGAAAAAGCGAATTCCGGTCACCCTGGAATGCCGATGGGTG 100
BSNT_02960___ 101 CCGCTCCAATGGCATACACGCTGTGGACAAA--ATTTATGAACGTAAGTC 148
|.||.||||||||||||.|..|.|||||.|| |.||| ||||||||||
BPUM_1690___t 101 CTGCACCAATGGCATACGCTTTATGGACGAATCACTTA--AACGTAAGTC 148
BSNT_02960___ 149 CGGCAAACCCTGGCTGGTTTAACCGTGACCGTTTTGTTTTATCTGCTGGA 198
||..||||||....|||||||||.|.|||||||||||.||||||||.|||
BPUM_1690___t 149 CGCAAAACCCAAATTGGTTTAACAGAGACCGTTTTGTATTATCTGCGGGA 198
BSNT_02960___ 199 CACGGGTCAGCACTAT-----TATACAGCATGCTTCATTTAAGCGGGTTT 243
||.||.| |||| ||||.||||||||||||||||||||.|..
BPUM_1690___t 199 CATGGTT-----CTATGCTTCTATATAGCATGCTTCATTTAAGCGGATAC 243
BSNT_02960___ 244 GATCTTAGTATTGAAGATCTTAAGGGATTCCGCCAGTGGGGCAGCAAAAC 293
.|.||.||.||.||.|||||.||...|||||||||.|||||.||||||||
BPUM_1690___t 244 AACCTGAGCATCGATGATCTAAAACAATTCCGCCAATGGGGTAGCAAAAC 293
BSNT_02960___ 294 ACCAGGACATCCGGAATTCGGACATACTGCCGGTGTTGATGCTACAACAG 343
|||.||||||||.|||||.||||||||.|..||.||.|||||.|||||||
BPUM_1690___t 294 ACCTGGACATCCTGAATTTGGACATACAGAAGGCGTAGATGCCACAACAG 343
BSNT_02960___ 344 GTCCGCTTGGCCAAGGAATTGCCATGGCAGTCGGTATGGCAATTGCTGAA 393
||||..|.||.||.||.||||||||||||||.|||||||||.||||.|||
BPUM_1690___t 344 GTCCTTTAGGACAGGGGATTGCCATGGCAGTTGGTATGGCACTTGCAGAA 393
BSNT_02960___ 394 CGCCATTTAGCGGAAACATACAACCGCGATTCA--TTTAACGTAGTCGAT 441
.|.|||.|.||||||||.||.|||...|| || |||||.||.||.|||
BPUM_1690___t 394 AGACATCTTGCGGAAACGTATAACAAAGA--CAACTTTAATGTTGTAGAT 441
BSNT_02960___ 442 CATTATACATACAGTATTTGCGGTGATGGTGATTTAATGGAAGGTATTTC 491
||.|||||||||||.||||||||.|||||.||.||||||||.||.|||||
BPUM_1690___t 442 CACTATACATACAGCATTTGCGGAGATGGAGACTTAATGGAGGGGATTTC 491
BSNT_02960___ 492 TTCTGAAGCCGCTTCACTCGCAGGCCATCTTCAGCTT-GGCCGTCTGATC 540
.||||||||.|||||.||.||.||.||| ||..|||| ||.|||.|.||.
BPUM_1690___t 492 CTCTGAAGCTGCTTCCCTTGCTGGTCAT-TTAGGCTTAGGACGTTTAATT 540
BSNT_02960___ 541 GTACTATACGATTCTAATGACATCTCTCTTGATGGAGACCTCGACCGTTC 590
||.||.||.|||||.|||||.||.|||.|.|||||.|||||.||.|||||
BPUM_1690___t 541 GTTCTTTATGATTCAAATGATATTTCTTTAGATGGCGACCTAGATCGTTC 590
BSNT_02960___ 591 ATTCTCTGAAAACGTGAAACAGCGTTTTGAAGCAATGAATTGGGAAGTTC 640
||||||||||||.|||||..|.|||||||||||.|||||.||||||||||
BPUM_1690___t 591 ATTCTCTGAAAATGTGAAGAATCGTTTTGAAGCGATGAACTGGGAAGTTC 640
BSNT_02960___ 641 TTTATGTTGAGGATGGAAACAATATTGAAGAATTAACAGCGGCTATCGAA 690
||||.||..|.||.||.|||||.|||||||||.|.|||||.|||||.|||
BPUM_1690___t 641 TTTACGTAAAAGACGGCAACAACATTGAAGAAGTGACAGCTGCTATTGAA 690
BSNT_02960___ 691 AAAGCACGCCAAAATGAAAAG--AAACCTACATTAATTGAAGTGAAAACG 738
||.|||...|||| |.|.|| |.|||||||.|.||.|||||||||||.
BPUM_1690___t 691 AAGGCAAAACAAA--GCACAGACAGACCTACACTGATCGAAGTGAAAACA 738
BSNT_02960___ 739 ACAATCGGATTCGGTTCACCTAACCGTGCCGGTACATCCGGTGTTCACGG 788
||.|||||.|||||.||.||.||||||||.||.||.||.|||||.||.||
BPUM_1690___t 739 ACCATCGGTTTCGGATCGCCAAACCGTGCAGGAACGTCTGGTGTGCATGG 788
BSNT_02960___ 789 TGCGCCGCTTGGTAAAGAGGAAAGCAAA-TTAACAAAAGAAGCTTACGCG 837
|||.||.|||||.|..||.| ||||||| .|.||.||.|||||.|||.|.
BPUM_1690___t 789 TGCACCACTTGGCAGCGACG-AAGCAAAGCTGACGAAGGAAGCATACTCT 837
BSNT_02960___ 838 TGGACATATGAAGAAGACTTCTACGTTCCGTCAGAAGTTTATGAGCATTT 887
|||||.|.|||||||||.|||.|.||.||.||.|||||.||.||.|||||
BPUM_1690___t 838 TGGACGTTTGAAGAAGATTTCCATGTACCTTCTGAAGTGTACGATCATTT 887
BSNT_02960___ 888 CGCTGCAGCTGTTAAAGAATCAGGTGAGAAAAAAGAACAAGAATGGAATG 937
|...|.||||||.|||||..|.|||.|||||||||||..||..|||||||
BPUM_1690___t 888 CAAAGAAGCTGTAAAAGACGCTGGTCAGAAAAAAGAAGCAGCTTGGAATG 937
BSNT_02960___ 938 CTCAATTCGCTAAATATAAAGAAGTTTATCCTGAACTTGCTGAACAGC-- 985
..|||||.||..|||||.||.|||..||.|||||.|| |.||||
BPUM_1690___t 938 AACAATTTGCGCAATATGAAAAAGAATACCCTGAGCT-----AGCAGCTC 982
BSNT_02960___ 986 --TTGAA-CTGGCAATCAAAGGAGAGCTTCCGAAGGACTGGGATCAAGAG 1032
||||| ||.||.||..|||||.|||||||..||.|.||||||||||||
BPUM_1690___t 983 AATTGAAGCTTGCGATTGAAGGAAAGCTTCCTGAGAATTGGGATCAAGAG 1032
BSNT_02960___ 1033 GTTCCTGTGTATGAAAAAGGAAGCAGCCTGGCATCCCGTGCATCTTCCGG 1082
.|||||||.||||||..|||....||.||.||.|||||.||.|||||.||
BPUM_1690___t 1033 ATTCCTGTTTATGAAGCAGGCTCAAGTCTTGCCTCCCGCGCTTCTTCAGG 1082
BSNT_02960___ 1083 TGAAGTTCTCAACGGACTTGCGAAAAAAATTCCTTTCTTTGTCGGAGGTT 1132
.|||||..|.||.||..|||||||..||.|.||||||||..|.||.||||
BPUM_1690___t 1083 CGAAGTCTTAAATGGCATTGCGAAGCAAGTACCTTTCTTCATTGGTGGTT 1132
BSNT_02960___ 1133 CTGCTGACCTAGCGGGATCGAACAAAACGACTATTAAAAATGCCGGTGAT 1182
||||||||||.||.||.||.||||||||.||.||.|||||..|.|..|||
BPUM_1690___t 1133 CTGCTGACCTTGCAGGTTCAAACAAAACAACGATCAAAAACACAGACGAT 1182
BSNT_02960___ 1183 TTTACAGCG---GTTGATTACTCAGGCAAAAACTTCTGGTTTGGTGTACG 1229
||| |.| |.|.||||..|.|||||.|||.|.|||||.|||||..|
BPUM_1690___t 1183 TTT---GGGAAAGATCATTATGCCGGCAAGAACATTTGGTTCGGTGTCAG 1229
BSNT_02960___ 1230 TGAATTTGCGATGGGTGCAGCCTTAAACGGTATGGCGCTTCATGGCGGTC 1279
.||||||||.||||||||.||.||||||||||||||.|||||.|||||.|
BPUM_1690___t 1230 AGAATTTGCAATGGGTGCCGCATTAAACGGTATGGCACTTCACGGCGGCC 1279
BSNT_02960___ 1280 TTCGTGTATTCGGCGGAACTTTCTTTGTCTTCTCTGATTACCTGCGTCCT 1329
|||||||||||||||||||.||||||||.|||||.||||||.|..|.||.
BPUM_1690___t 1280 TTCGTGTATTCGGCGGAACGTTCTTTGTTTTCTCAGATTACTTAAGACCA 1329
BSNT_02960___ 1330 GCGATTCGCCTTGCAGCGTTAATGGGCCTTCCTGTGACATATGTCTTCAC 1379
||||||||.|||||.||.||||||||.|||||.||.||.||||||||.||
BPUM_1690___t 1330 GCGATTCGTCTTGCTGCCTTAATGGGACTTCCAGTTACTTATGTCTTTAC 1379
BSNT_02960___ 1380 ACATGACAGTATTGCGGTTGGTGAAGACGGTCCGACGCACGAGCCTGTTG 1429
.||||||||||||||.|||||||||||.||.||||||||.|||||.||||
BPUM_1690___t 1380 TCATGACAGTATTGCTGTTGGTGAAGATGGCCCGACGCATGAGCCGGTTG 1429
BSNT_02960___ 1430 AACAGCTTGCTTCACTCCGTGCGATGCCTAACCTTTCTTTGATCCGTCCA 1479
||||||||||||||.|.|||||||||||.|||||||||.|.||.||.||.
BPUM_1690___t 1430 AACAGCTTGCTTCATTACGTGCGATGCCAAACCTTTCTGTCATTCGCCCT 1479
BSNT_02960___ 1480 GCAGACGGCAATGAGACAGCAGCAGCATGGAAGCTTGCAGTGCAAAGC-- 1527
||.||.||.||.||||||||.|||||.|||||.|||||.|| |.|
BPUM_1690___t 1480 GCGGATGGGAACGAGACAGCTGCAGCGTGGAAACTTGCTGT----ATCTT 1525
BSNT_02960___ 1528 --ACTGACCACCCAACAGCGCTAGTGCTTACACGTCAAAACCTTCCTACC 1575
||.||..|.||.|||||.|||||.||.||.||||||||||||||.||.
BPUM_1690___t 1526 CAACGGATAAACCGACAGCACTAGTTCTGACTCGTCAAAACCTTCCAACG 1575
BSNT_02960___ 1576 ATCGATCAAACAGCTGAAGAA-GCATTGGCAGGAGTAGAAAAAGGTGCAT 1624
||.||||||.||.||| |||| ||||..|.||||||||||||.||||.||
BPUM_1690___t 1576 ATTGATCAAGCACCTG-AGAAGGCATATGAAGGAGTAGAAAAGGGTGGAT 1624
BSNT_02960___ 1625 A---TGTCGTTTCTAAATCTAAAAACGAAACA------------CCTGAC 1659
| |||||| .|||.|| ||.||.
BPUM_1690___t 1625 ACGTTGTCGT---------------GGAAGCAGCTGATGCACAGCCAGAA 1659
BSNT_02960___ 1660 GCTCTTCTCATCGCTTCCGGATCAGAGGTAGGTCTTGCAATTGAAGCGC- 1708
||.|||||..|||||||.|||||.|||||.|||.|.||.||||||||||
BPUM_1690___t 1660 GCACTTCTACTCGCTTCTGGATCTGAGGTTGGTTTAGCGATTGAAGCGCA 1709
BSNT_02960___ 1709 --AGGCTGAATTGGCAAAAGAAAATATCGATGTTTCTGTTGTCAGCATGC 1756
|||| |.|.|.||||||...||||...|..|||||||||||..|.|
BPUM_1690___t 1710 AAAGGC---ACTTGAAAAAGAGGGTATCCGCGCATCTGTTGTCAGTCTTC 1756
BSNT_02960___ 1757 CTTCAATGGACCGTTTTGAGAAACAATCTGATGAATACAAAAACGAAGTC 1806
||.||..|||.||.||.||..|.||.|||||.|||||||||.|...||||
BPUM_1690___t 1757 CTGCATGGGATCGATTCGATCAGCAGTCTGACGAATACAAAGAGTCAGTC 1806
BSNT_02960___ 1807 CTTCCTGCAGATGTGAAAAAACGTCTTGCAATTGAAATGGGCTCATCATT 1856
|||||..|||..|||......|||.||||.|||||||||||..|.|||.|
BPUM_1690___t 1807 CTTCCGACAGCAGTGCGGGCTCGTGTTGCGATTGAAATGGGAGCTTCACT 1856
BSNT_02960___ 1857 TGGATGGG-GCAAATACACGGGGCTTGAAGGTGACGTTCTCGGCATAGAC 1905
|||.|||| || ..|||||.||.||.||.||||||||..|.|.|||.||.
BPUM_1690___t 1857 TGGCTGGGAGC-GTTACACTGGTCTCGATGGTGACGTAATTGCCATTGAT 1905
BSNT_02960___ 1906 CGATTCGGTGCATCTGCTCCAGGTGAAACCATCATTAACGAATACGGCTT 1955
..|||.|||||||||||.||.|||||||||||.|||.|..||||||||||
BPUM_1690___t 1906 AAATTTGGTGCATCTGCACCTGGTGAAACCATTATTGAGAAATACGGCTT 1955
BSNT_02960___ 1956 ----CTCAGTTCCGAACGTAGTGAATCGAGTTAAGGCATTAA--TCAATA 1999
.|||| .||.||.||.|..||.||.||.|| .|| |.||.|
BPUM_1690___t 1956 TACGGTCAG----CAATGTCGTCAGCCGTGTGAAAGC--GAAGCTGAACA 1999
BSNT_02960___ 2000 AGTAA 2004
|.|||
BPUM_1690___t 2000 AATAA 2004
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