Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02962 and BPUM_1691

See Amino acid alignment / Visit BSNT_02962 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:29
# Commandline: needle
#    -asequence dna-align/BSNT_02962___yneE.1.24716.seq
#    -bsequence dna-align/BPUM_1691___yneE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02962___yneE-BPUM_1691___yneE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02962___yneE-BPUM_1691___yneE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02962___yneE
# 2: BPUM_1691___yneE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 489
# Identity:     309/489 (63.2%)
# Similarity:   309/489 (63.2%)
# Gaps:          84/489 (17.2%)
# Score: 862.5
# 
#
#=======================================

BSNT_02962___      1 ATGGAACGTCACTACTATACGTACCTGATCAAAGAGGAATTTGCCAATCA     50
                     ||||||||.||.||.||||..||...|||..|.||.||||||||..||||
BPUM_1691___y      1 ATGGAACGCCATTATTATATTTATTGGATTGAGGATGAATTTGCGCATCA     50

BSNT_02962___     51 CTATTTCGGCCGGGAATCGGTTATGTTTGAGCTGTTTCAAGAC--TATCA     98
                     .|||||.||..|.|||||..||.|||||.|..||||| .||.|  || ||
BPUM_1691___y     51 TTATTTTGGTAGAGAATCAATTTTGTTTCATTTGTTT-GAGTCGTTA-CA     98

BSNT_02962___     99 TTGGACAAGCCTTGAAAAGCA--GCAGTATGAA------ATGACAGAGAA    140
                     .|||||       |||..|||  |.|| |||||      |||...|.|||
BPUM_1691___y     99 CTGGAC-------GAATCGCACGGAAG-ATGAATTGGTGATGCTTGTGAA    140

BSNT_02962___    141 ACAGATTCAATATATTAC---AC--AACCAATCCC-GATTTTACATATGC    184
                     |||     |.|..|||||   ||  |||.|||||| |.|||| |||||||
BPUM_1691___y    141 ACA-----AGTGGATTACGTGACGAAACGAATCCCTGCTTTT-CATATGC    184

BSNT_02962___    185 ATCAGCGGTTAAAAATGAATTTAAACAAGACGGAT--------TACAGGC    226
                     |.|||||.||||..|..||.|||      |||.||        ||||  |
BPUM_1691___y    185 ACCAGCGATTAATGAACAACTTA------ACGAATATTCACTATACA--C    226

BSNT_02962___    227 A-----GCTGGATTATATTTATAGAATA----GCT---TTGCCGAAAGCA    264
                     |     |||.|||            |||    |||   ||.||..|.|.|
BPUM_1691___y    227 AAATTGGCTCGAT------------ATACAGCGCTTCCTTACCTGATGGA    264

BSNT_02962___    265 AAAGGCCAC-GCGACGTTTATGATGAAGGAGCAC-ATGATAGAAAT-TGT    311
                     ||||| .|| ||..|.|||||.||.||.||.|.| || ||..|||| |.|
BPUM_1691___y    265 AAAGG-AACGGCTGCATTTATCATAAAAGATCGCTAT-ATCCAAATGTCT    312

BSNT_02962___    312 GGCTTCGGGAGATTACGAGGCAGAAACGATATTCTTTGAAGTGTTAAGAA    361
                     |.|..|||.|| |||.||.||||||.|..|.||.|||||||||.|.||||
BPUM_1691___y    313 GCCACCGGCAG-TTATGAAGCAGAAGCAGTGTTTTTTGAAGTGCTGAGAA    361

BSNT_02962___    362 AAGTAAGCCCTTGCTTTTTAGCAATGGATTTCAATTC---GAAGCGTTAC    408
                     ||.|.||.||||||||..|.||.|||||.|||..|||   |||||   ||
BPUM_1691___y    362 AAATTAGTCCTTGCTTCCTTGCGATGGACTTCGGTTCAAAGAAGC---AC    408

BSNT_02962___    409 GGATGGCTAAATCCGGTGAAAGAAAGAAATTTTGTCTAA    447
                     ||.|||||.||||||||.||||..||.||||||||.|||
BPUM_1691___y    409 GGGTGGCTCAATCCGGTAAAAGTGAGGAATTTTGTTTAA    447


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