Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02965 and BPUM_1693
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_02965___ynzD.1.24716.seq
# -bsequence dna-align/BPUM_1693___ynzD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02965___ynzD-BPUM_1693___ynzD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02965___ynzD-BPUM_1693___ynzD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02965___ynzD
# 2: BPUM_1693___ynzD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 212
# Identity: 128/212 (60.4%)
# Similarity: 128/212 (60.4%)
# Gaps: 43/212 (20.3%)
# Score: 378.0
#
#
#=======================================
BSNT_02965___ 1 ----ATGAAAGGATACATCCCTGTGATTAGAGAGCATC--TATTAAAAGA 44
||||||||| ||||..||.||.| .|.|.|||| ||||||...|
BPUM_1693___y 1 TTGCATGAAAGGA-ACATGACTTTGGT--AAAAACATCATTATTAACTCA 47
BSNT_02965___ 45 AATTGAAAAAAAAAGAGCAGAGCTGCTGCAAATTGTCATGGCGAACGGAA 94
|||.|||.|||||||||.|||||||.||.||.|||||.||...||.||.|
BPUM_1693___y 48 AATCGAAGAAAAAAGAGAAGAGCTGATGAAAGTTGTCTTGCACAATGGGA 97
BSNT_02965___ 95 TGACATC-TCATATTACGATAGAGCTCAGTCAGGAGCTTGACCATCTTCT 143
||||||| .|| .|.||.||.||.|..||.|||.||||.||.|||||.||
BPUM_1693___y 98 TGACATCAACA-GTGACCATCGAACATAGCCAGCAGCTAGATCATCTCCT 146
BSNT_02965___ 144 CATACAATATCAAAAGCAGCGCCT-----------TCGAGC--AGTAGCG 180
|.|||||||||||...|| || || ||| |.||.
BPUM_1693___y 147 CTTACAATATCAACGACA----CTTACACTCAAACTC-AGCCAACTAA-- 189
BSNT_02965___ 181 GGTGATGAATGA 192
BPUM_1693___y 189 ------------ 189
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