Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02975 and BPUM_1698

See Amino acid alignment / Visit BSNT_02975 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:30
# Commandline: needle
#    -asequence dna-align/BSNT_02975___sspO.1.24716.seq
#    -bsequence dna-align/BPUM_1698___sspO.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02975___sspO-BPUM_1698___sspO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02975___sspO-BPUM_1698___sspO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02975___sspO
# 2: BPUM_1698___sspO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 151
# Identity:     115/151 (76.2%)
# Similarity:   115/151 (76.2%)
# Gaps:           8/151 ( 5.3%)
# Score: 421.0
# 
#
#=======================================

BSNT_02975___      1 ATGGTCAAAA-GAAAAGCGAATCACGTCATTAACGGAATGAATGACGCAA     49
                     || |.||||| |.|||||.|||||.||.||||||||.|||||.|..||.|
BPUM_1698___s      1 AT-GACAAAACGTAAAGCCAATCATGTGATTAACGGCATGAACGCAGCCA     49

BSNT_02975___     50 AAAGCCAAGGCAAAGGCGCCGGCTATATTGAAAACGACCAGCTTGTACTG     99
                     ||||||||||.||.||.||.||||||||||||.|.||.|||||.||..|.
BPUM_1698___s     50 AAAGCCAAGGAAATGGTGCAGGCTATATTGAAGATGATCAGCTCGTTTTA     99

BSNT_02975___    100 ACTGAAGCAGAAC---GCCAAAATAACAAAAAAAGAAAAACCAATCAATA    146
                     ||   ||||||||   |.|||||.||.||||||.|.||||..||||||||
BPUM_1698___s    100 AC---AGCAGAACAAAGACAAAACAATAAAAAACGTAAAAAAAATCAATA    146

BSNT_02975___    147 A    147
                     |
BPUM_1698___s    147 A    147


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.