Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02996 and BPUM_1712

See Amino acid alignment / Visit BSNT_02996 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:32
# Commandline: needle
#    -asequence dna-align/BSNT_02996.1.24716.seq
#    -bsequence dna-align/BPUM_1712___ynfC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02996-BPUM_1712___ynfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02996-BPUM_1712___ynfC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02996
# 2: BPUM_1712___ynfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 399
# Identity:     223/399 (55.9%)
# Similarity:   223/399 (55.9%)
# Gaps:         108/399 (27.1%)
# Score: 579.5
# 
#
#=======================================

BSNT_02996         1 TTGAAAAAAGTAACGATATTG---AAAGCATCCATCTTATTCTTGGCGAT     47
                     .|||||||   ||..||.|||   |||..|.|..||||||||.|.||..|
BPUM_1712___y      1 ATGAAAAA---AAATATGTTGCTAAAATTAGCTGTCTTATTCATAGCACT     47

BSNT_02996        48 TGCCAGTTTTCATTTGCTCTCAATTCCCCACGCCTTTGATATCGGT----     93
                     .||.||||||||||||.|||||||.||.||..||.||.|    |||    
BPUM_1712___y     48 CGCAAGTTTTCATTTGTTCTCAATGCCTCATTCCGTTCA----GGTATAC     93

BSNT_02996        94 CATCATTATAAAGCCGTAGCCGACCAGCAGGAAAT-GCATGAAATGAAAG    142
                     ||||||...||.|..||.|||||.||  ||  ||| .|||||.||||||.
BPUM_1712___y     94 CATCATGCAAAGGTGGTTGCCGATCA--AG--AATCACATGAGATGAAAA    139

BSNT_02996       143 CCGGCCAA--AATGCTGATGATGAGAAGAAATCCATCACA----------    180
                     .||..|||  ||||  |..|||||.|||||| |.|..|||          
BPUM_1712___y    140 TCGCTCAAACAATG--GGCGATGAAAAGAAA-CAAAAACATGTGAGCGCA    186

BSNT_02996       181 ------GGGGCATTTACACTGACCGCTTTATGGGCAATGGCTGTTCTGCT    224
                           |..|||||||||.| ||.|| |.|||   |.||||.||      
BPUM_1712___y    187 GTATTTGCCGCATTTACAGT-ACTGC-TGATG---ATTGGCAGT------    225

BSNT_02996       225 GCTGACCGCTGAAAGCAAAAGTACGGGAT----AC---TCCCGCAGAC--    265
                      .||||.|||               ||||    ||   ||.|.||.||  
BPUM_1712___y    226 -ATGACAGCT---------------GGATTTGCACGCATCACTCATACTG    259

BSNT_02996       266 ------GTCAGCGGAAAAA-AAGCTTTATACTGGCCAAATTTTATCAATC    308
                           .|.|.|||||||| ||||.|| ||||.||....||.||||||||
BPUM_1712___y    260 ATCAATATGACCGGAAAAAGAAGCATT-TACTTGCAGTGTTCTATCAATC    308

BSNT_02996       309 GTCTTATTTCGGCAAACT---TCATGTTCAACATCACCCGATTATGTAA    354
                     .|||||||||.|   |||   ||.||||.||                  
BPUM_1712___y    309 TTCTTATTTCCG---ACTATCTCGTGTTTAA------------------    336


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.