Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03004 and BPUM_1747

See Amino acid alignment / Visit BSNT_03004 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:32
# Commandline: needle
#    -asequence dna-align/BSNT_03004___ynfF.1.24716.seq
#    -bsequence dna-align/BPUM_1747___ynfF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03004___ynfF-BPUM_1747___ynfF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03004___ynfF-BPUM_1747___ynfF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03004___ynfF
# 2: BPUM_1747___ynfF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1281
# Identity:    1002/1281 (78.2%)
# Similarity:  1002/1281 (78.2%)
# Gaps:          27/1281 ( 2.1%)
# Score: 3874.5
# 
#
#=======================================

BSNT_03004___      1 ATGATTCCACGCATAAAAAAAACAATTTGTGTAC--TATTAGTATGTTTC     48
                     |||  |||| ..||.||||||.|||||  ||.||  ||||.||.||.|||
BPUM_1747___y      1 ATG--TCCA-TAATCAAAAAACCAATT--TGCACTTTATTGGTCTGCTTC     45

BSNT_03004___     49 ACTATGCTGTCAGTCATGT---TAGGGCCAGGCGCTACTGAAGTTTTGGC     95
                     |||||||||||.|||||||   ||||.||.||||..|||||.||.|..||
BPUM_1747___y     46 ACTATGCTGTCTGTCATGTTCATAGGCCCCGGCGTAACTGAGGTGTCAGC     95

BSNT_03004___     96 AGCCAGTGATG-TAACAGTTAATGT-ATCTGCAGAGAAACAAGTGATTCG    143
                     .||.||||||| .||.| ||||||| |.| ||.||.|.||||.||||.||
BPUM_1747___y     96 GGCAAGTGATGCGAATA-TTAATGTCAAC-GCGGAAAGACAAATGATCCG    143

BSNT_03004___    144 CGGTTTTGGAGGGATGAACCATCCGGCTTGGGCTGGGGATCTTACAGCAG    193
                     |||.|||||.||.||||||||||||||||||..|||.|||.|.||.|.|.
BPUM_1747___y    144 CGGCTTTGGCGGAATGAACCATCCGGCTTGGATTGGTGATTTGACCGGAC    193

BSNT_03004___    194 CTCAAAGAGAAACTGCTTTTGGCAATGAACAGAACCAGTTAGGATTTTCA    243
                     |||||||.|||||.||.|||||.||||..|||||.|||||||||||.||.
BPUM_1747___y    194 CTCAAAGGGAAACCGCATTTGGTAATGGGCAGAATCAGTTAGGATTCTCC    243

BSNT_03004___    244 ATCTTAAGAATTCATGTAGATGAAAATCGAAATAATTGGTATAAAGAGGT    293
                     ||.|||.|.|||.|||||||.||.||..|||||||||||.|.|.|||.||
BPUM_1747___y    244 ATTTTACGGATTTATGTAGACGAGAACAGAAATAATTGGCACAGAGAAGT    293

BSNT_03004___    294 GGAGACTGCCAAGAGTGCGGTCAAACATGGGGCAATCGTTTTTGCATCTC    343
                     .|..||.||.||.||.|||.|..|.||.||.||..|.||..|.||.||.|
BPUM_1747___y    294 CGCCACCGCTAAAAGAGCGATAGAGCACGGCGCTTTGGTGATCGCTTCAC    343

BSNT_03004___    344 CCTGGAATCCTCCAAGTGATATGGTTGAGACCTTCAATCGGAATGGTGAC    393
                     |.||||||||||||||..|||||||.|||||.|||||.||.|||||||  
BPUM_1747___y    344 CTTGGAATCCTCCAAGCCATATGGTGGAGACTTTCAACCGTAATGGTG--    391

BSNT_03004___    394 ACATCAGCTAAGCGGCTGAAATACGATAAGTACGCCGCATACGCGCAGCA    443
                      |.||.||.||||||||.|.||||.||.|.||||||||||||||.|||||
BPUM_1747___y    392 -CGTCTGCAAAGCGGCTAAGATACAATCAATACGCCGCATACGCTCAGCA    440

BSNT_03004___    444 TCTTAACGATTTTGTTACCTTCATGAAAAATAATGGTGTGAATCTTTATG    493
                     |.|.||.||||||||.||.|.|||||||||||||||.||.|||||.||||
BPUM_1747___y    441 TTTGAATGATTTTGTGACATACATGAAAAATAATGGCGTCAATCTATATG    490

BSNT_03004___    494 CGATTTCGGTCCAAAACGAGCCTGATTACGCTCACGAGTGGACGTGGTGG    543
                     |.|||||.||.|||||||||||||||||.||.||.||.|||||.||||||
BPUM_1747___y    491 CCATTTCTGTACAAAACGAGCCTGATTATGCACATGAATGGACATGGTGG    540

BSNT_03004___    544 ACGCCGCAAGAAATACTTCGCTTTATGAGAGAAAACGCCGGCTCGATCAA    593
                     ||.||.||.|||||.||.||.||.|||||||||||.||||||||.||.||
BPUM_1747___y    541 ACACCTCAGGAAATCCTGCGATTCATGAGAGAAAATGCCGGCTCCATTAA    590

BSNT_03004___    594 TGCCCGCGTCATTGCACCTGAGTCTTTTCAATACTTAAAGAATTTGTCGG    643
                     .||.|||||.||||||||.||.||.|||||||||.|.||||||.|.||.|
BPUM_1747___y    591 CGCACGCGTGATTGCACCAGAATCCTTTCAATACCTTAAGAATATCTCAG    640

BSNT_03004___    644 ACCCGATCTTGAACGATCCGCAGGCTCTTGCCAATATGGATATTCTCGGA    693
                     |.||.|||||.||||||.|||||||.|||...||||||||.|||||||||
BPUM_1747___y    641 ATCCTATCTTAAACGATTCGCAGGCGCTTAGAAATATGGACATTCTCGGA    690

BSNT_03004___    694 ACTCACCTGTACGGCACCCAGGTCAGCCAATTCCCTTATCCTCTTTTCAA    743
                     .|.||.||||||||.|||||..|.|||||..|.||.||||||||||||||
BPUM_1747___y    691 GCCCATCTGTACGGAACCCAAATTAGCCAGCTTCCGTATCCTCTTTTCAA    740

BSNT_03004___    744 ACAAAAAGGAGCGGGGAAGGACCTTTGGATGACGGAAGTATACTATCCAA    793
                     |||||||||||.|||.||.||.||.||||||||.||.||.|||||.||.|
BPUM_1747___y    741 ACAAAAAGGAGGGGGAAAAGAGCTGTGGATGACAGAGGTCTACTACCCGA    790

BSNT_03004___    794 ACAGTGATAACAACTCGGCGGATCGATGGCCTGAGGCATTGGATGTTTCA    843
                     |.||.||||||||.||.||.||.||.||||||||||||||.|..||.|||
BPUM_1747___y    791 ATAGCGATAACAATTCTGCAGACCGCTGGCCTGAGGCATTAGGGGTATCA    840

BSNT_03004___    844 CAGCATATTCACAATGCGATGGTAGAGGGGGACTTTCAAGCTTATGTATG    893
                     .|||||||||||.||.|.|||||.||.|||||||||||.||.|||||.||
BPUM_1747___y    841 GAGCATATTCACCATTCAATGGTGGAAGGGGACTTTCAGGCGTATGTGTG    890

BSNT_03004___    894 GTGGTACATCCGAAGATCATATGGACCTATGAAAGAAGATGGTACGATCA    943
                     ||||||||||||.||||||||.||.|||||||||||||||||.|.|||.|
BPUM_1747___y    891 GTGGTACATCCGCAGATCATACGGTCCTATGAAAGAAGATGGAATGATTA    940

BSNT_03004___    944 GCAAACGCGGCTACAATATGGCTCATTTCTCAAAGTTTGTGCGTCCCGGC    993
                     ||||.|||||.|||||||||||.||||||||.||||||||||||||.||.
BPUM_1747___y    941 GCAAGCGCGGATACAATATGGCGCATTTCTCCAAGTTTGTGCGTCCAGGA    990

BSNT_03004___    994 TATGTAAGGATTGATGCAACGAAAAACCCTAATGCGAACGTTTACGTGTC   1043
                     |..||.||..||||||||||.||||.||||.|..||||.||||.||||||
BPUM_1747___y    991 TTCGTCAGAGTTGATGCAACAAAAAGCCCTGAACCGAATGTTTTCGTGTC   1040

BSNT_03004___   1044 AGCCTATAAAGGTGACAACAAGGTCGTTATTGTTGCCATCAATAAAAGCA   1093
                     ||||||||||||..||||..|||||||.|||||.||.||.||.||||.||
BPUM_1747___y   1041 AGCCTATAAAGGAAACAATCAGGTCGTCATTGTCGCGATTAACAAAAACA   1090

BSNT_03004___   1094 ACACAGGAGTCAACCAAAACTTTGTTTTGCAGAATGGATCTGCTTCAAAC   1143
                     |..||||||||||.|||.||||||||.||||.||||||.|||||||.||.
BPUM_1747___y   1091 ATGCAGGAGTCAATCAACACTTTGTTATGCAAAATGGAACTGCTTCGAAA   1140

BSNT_03004___   1144 GTATCTAGATGGATCACGAGCAGCAGCAGCAATCTACAACCTGGAACGAA   1193
                     |..||.||||||.||||.||.||.|.|||.||.||.||.|||||||    
BPUM_1747___y   1141 GCGTCAAGATGGGTCACAAGTAGTAACAGTAACCTTCAGCCTGGAA----   1186

BSNT_03004___   1194 TCTCACT-----GTATCAGGCAATCATTTTTGGGCCCATCTTCCAGCTCA   1238
                      ||.|||     .|||||||.|||||.||||||||.|||||.||.|||||
BPUM_1747___y   1187 -CTGACTTAAACATATCAGGAAATCAATTTTGGGCACATCTCCCTGCTCA   1235

BSNT_03004___   1239 AAGCGTAACAACATTTGTTGTAAATCGTTAA   1269
                     |||.||.|||||||||||.||.||.||.|||
BPUM_1747___y   1236 AAGTGTGACAACATTTGTGGTCAAACGCTAA   1266


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