Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05519 and BPUM_1762
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_05519.1.24716.seq
# -bsequence dna-align/BPUM_1762.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05519-BPUM_1762.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05519-BPUM_1762.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05519
# 2: BPUM_1762
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 399
# Identity: 245/399 (61.4%)
# Similarity: 245/399 (61.4%)
# Gaps: 81/399 (20.3%)
# Score: 660.0
#
#
#=======================================
BSNT_05519 1 ATGAGA---AAGATAAAA---AAAATGCCAGAAAT-AAGTTTACAACCCT 43
|||||| ||.|||||| .||.|.||.|.|.| ||..|| ||.||.|
BPUM_1762 1 ATGAGAAGGAATATAAAACTCGAAGTCCCTGTATTCAACATT-CATCCTT 49
BSNT_05519 44 TAAGGATTCCAAAAGGATGGACCATAAATCAAAACAGTTTTAGAGAAATT 93
||||.||..|..||||.||||...||..|.|.||.|.||||||.||||||
BPUM_1762 50 TAAGAATAACTGAAGGTTGGATTGTACGTTATAATAATTTTAGGGAAATT 99
BSNT_05519 94 GATCCGAAAAACCTAGCACCAGACGATGAAAAATGGTTGTTTTTTTCAC- 142
||.||.|||||..|||.|.||||.|||||.|.||||| ||.|.|||||
BPUM_1762 100 GACCCTAAAAAGTTAGAAACAGAAGATGATAGATGGT--TTATGTTCACT 147
BSNT_05519 143 --AAGATTTAATGCAA--TTAACATACTCTCGTAAAA--ATTACTTAC-- 184
||| ||||.|.||| |||.||| |.|||| ||.|.|.||
BPUM_1762 148 GAAAG-TTTATTACAACTTTATCAT------GAAAAATCATCAATAACAT 190
BSNT_05519 185 TTGATTTAGGTTGGTATCCAGA------TGCGGATGCTAA-TGGATTTTA 227
|.|||||||||||||||||.|| |.|.||||.||| |...||.|
BPUM_1762 191 TGGATTTAGGTTGGTATCCCGATATATCTTCTGATGGTAACTACCTTGT- 239
BSNT_05519 228 TCAACTAGTTATGATGCAAAATGAGGATTGGGATCAACCCATAT--ATGA 275
||.|.|||||| |||||...|||||||| |||.|| ||| ||||
BPUM_1762 240 TCTAATAGTTA------AAAATACAGATTGGGA-CAATCC-TATTGATGA 281
BSNT_05519 276 ATT----TCAGACAA--ATAGCCATATTGAAATAGTTAAAAATATAGAAT 319
||| ||.||..| ||| |||.|.||| ||.|...||||||||
BPUM_1762 282 ATTCAACTCGGATGACTATA-CCAAAGTGA-----TTGATTTTATAGAAT 325
BSNT_05519 320 TT-ATATTAAACAAAGTTAC-------------GAATAATGAAATGTAG 354
|| ||.|.|||.||| |||| .|||||
BPUM_1762 326 TTCATTTGAAAGAAA-TTACATCCAACTGGTGGAAATAA---------- 363
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