Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03845 and BPUM_1763
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_03845.1.24716.seq
# -bsequence dna-align/BPUM_1763.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03845-BPUM_1763.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03845-BPUM_1763.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03845
# 2: BPUM_1763
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 426
# Identity: 204/426 (47.9%)
# Similarity: 204/426 (47.9%)
# Gaps: 159/426 (37.3%)
# Score: 409.0
#
#
#=======================================
BSNT_03845 1 ATGGATAATAAAAATAAAGAATTAATTAATT----------ATTTCTTTA 40
||..|||.| .||||| .||| || .|||.||||
BPUM_1763 1 ----ATGTTAAGA--GAAGAA--CATT--TTCCTGTGGTGGCTTTTTTTA 40
BSNT_03845 41 AGGTTATTGGTGATGAACGATTTATACGAATTT--TAGAGAATTTCTCCA 88
|.|..|||..||||||..|.|||.|| |||.| |..||.||||.||.|
BPUM_1763 41 ATGCCATTACTGATGATAGCTTTGTA--AATATGGTTCAGCATTTATCTA 88
BSNT_03845 89 ACGGAGAAGGTTATGGTATAGAGAATGTCTGGTGTG--TATTTGCTGATG 136
..||||.|||||||||.||..|..|||| ||.| || .||||.|..|||
BPUM_1763 89 CGGGAGTAGGTTATGGAATTAACGATGT-TGAT-TGCACATTTCCAAATG 136
BSNT_03845 137 A-CTACGAACAGTGGGAA---GAAGATTACTTTGGAG-------ATGAGG 175
| || |||| ||.|| |||| ||| |.
BPUM_1763 137 ATCT----------GGAACCCGACGA-------GGAGCCCTTTCATG-GA 168
BSNT_03845 176 GTATAGCTTTTT--ATTTCGATTACCCAACAGTCAAAGAAGATGAAGAAG 223
||| ||.||| |.||| |.|||||.||.|
BPUM_1763 169 GTA---CTATTTGCACTTC-------------------ATGATGATGAGG 196
BSNT_03845 224 TCATATTAGATTACGAAAATTTCTA-TAAATATTTAAATGAAATTGTTGG 272
|.||..|.|||||..|||..||||| || ||| |.|||.
BPUM_1763 197 TTATTGTTGATTATCAAACATTCTACTA-----TTA--------TCTTGA 233
BSNT_03845 273 TCAA-TATGTAGAACGACACCCAGACAATAAATTAGA-AGTA-------G 313
.||| ..||||..||| ||.||||.| |||| |
BPUM_1763 234 GCAAGCCTGTAACACG------------TACATTACAGAGTATCCTCAGG 271
BSNT_03845 314 AAAAATATATGGAAACC-ATTAAAGAG---------------------AA 341
|.|| |||||| ||||..||| ||
BPUM_1763 272 ATAA-------GAAACCTATTAGCGAGGTGTTAAGGAAGGTAATTGAAAA 314
BSNT_03845 342 ATATA-AT------ATTAAGCTATAA 360
||||| || |||.|
BPUM_1763 315 ATATAGATTGGCCAATTGA------- 333
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