Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03014 and BPUM_1780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:32
# Commandline: needle
# -asequence dna-align/BSNT_03014.1.24716.seq
# -bsequence dna-align/BPUM_1780___yngE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03014-BPUM_1780___yngE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03014-BPUM_1780___yngE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03014
# 2: BPUM_1780___yngE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1596
# Identity: 1126/1596 (70.6%)
# Similarity: 1126/1596 (70.6%)
# Gaps: 132/1596 ( 8.3%)
# Score: 3870.0
#
#
#=======================================
BSNT_03014 1 ATGG--ATTAT----GA-----AAAGGAACGAACAGAACGGGCTGAACGG 39
|||| ||.|| || ||..|||..||||| ||.
BPUM_1780___y 1 ATGGGCATGATCGAAGAATTTGAATTGAAAAAACAG-----------CGA 39
BSNT_03014 40 ATTCGAAAAGGCGGAGCGGAAAAGTATCATCAAGGCAATCGGGAAAAAGG 89
|||...|||||.||.||.||....||.||||||...||....||||||||
BPUM_1780___y 40 ATTGTCAAAGGAGGGGCCGAGCGATACCATCAAAAAAACAAAGAAAAAGG 89
BSNT_03014 90 CAAGCTCTTTGTCAGAGAGCGGCTTTCCC---TTCTCTTTGACGATGA-- 134
.||..|.||.|||.|.||.||||| || |.||.||.||..|.||
BPUM_1780___y 90 AAAATTGTTCGTCCGCGACCGGCT---CCAGTTGCTATTAGATCAGGATT 136
BSNT_03014 135 ----CATTGAGCTAGAAGACGCTTTTTTTGCGGAATGTATGTCAGACGGG 180
|||.||| ||.||..|.|||||.||.|||| .|||.|.|
BPUM_1780___y 137 CGTTCATGGAG------GATGCAATGTTTGCCGAGTGTA---AAGATGAG 177
BSNT_03014 181 C---TTCCCGCTGACGGAGTTGTAACCGGTATCGGCAAAATCGG-----C 222
| |.||.||.||.||.|||||.||.||.| |||.| ||| |
BPUM_1780___y 178 CATTTACCAGCAGATGGTGTTGTCACAGGGA-CGGGA----CGGATGAAC 222
BSNT_03014 223 GGCCAAACTGTTTGCGTCATGGCGAATGATTCAACAGTGAAAGCGGGGTC 272
||.|||||.||.|||||.|||||.||||||||.||.||.|||||.||.||
BPUM_1780___y 223 GGGCAAACCGTATGCGTAATGGCAAATGATTCTACTGTCAAAGCTGGATC 272
BSNT_03014 273 ATGGGGAGCTAAAACAGTTGAAAAAATCATCAGAATTCAAGAAACCGCGG 322
.|||||.|..|||||.||||||||||||||||||||.||||||||.||||
BPUM_1780___y 273 GTGGGGCGTCAAAACCGTTGAAAAAATCATCAGAATCCAAGAAACAGCGG 322
BSNT_03014 323 AAAAATTAAACTGTCCGCTCATTTATTTAGTCGATTCGGCAGGCGCCCGA 372
|||||.|.|||||.|||.|..|.||||||||.||.||.||.||.||..||
BPUM_1780___y 323 AAAAACTCAACTGCCCGATGCTGTATTTAGTTGACTCTGCGGGTGCAAGA 372
BSNT_03014 373 ATTACCGACCAAAT--CAATGTCTTTCCAGGGAGACGCGGTGCAGGAAGA 420
||.|||||.||||| ||||| ||||||||.|||.|.||.||.|||.|.
BPUM_1780___y 373 ATCACCGATCAAATTGCAATG--TTTCCAGGCAGAAGGGGAGCGGGACGT 420
BSNT_03014 421 ATTTTTTACAATCAAGTCAAATTATCGGGACGCATTCCGCAAATCTGTCT 470
||||||||.||.||.||.||..|.||.|||||.||.||||||.|.|||.|
BPUM_1780___y 421 ATTTTTTATAACCAGGTAAAGCTTTCTGGACGTATCCCGCAAGTTTGTTT 470
BSNT_03014 471 GCTTTTCGGACCATCTGCGGCAGGTGGCGCTTATATTCCGGCCTTCTGTG 520
.||.||.||.||.|||||||||||.||.|||||.|||||.||.||.||||
BPUM_1780___y 471 ACTATTTGGCCCTTCTGCGGCAGGAGGTGCTTACATTCCTGCTTTTTGTG 520
BSNT_03014 521 ATATCGTCGTTATGGTAGACGGTAACGCCTCCATGTATTTAGGCTCGCCA 570
|.|||||.||.|||||.||.||.||.|||||.||||||||||||||.||.
BPUM_1780___y 521 ACATCGTTGTGATGGTCGAAGGGAATGCCTCGATGTATTTAGGCTCTCCG 570
BSNT_03014 571 AGGATGGCGGAAATGGTTATTGGAGAAAAAGTGTCTCTTGAAGAAATGGG 620
||.|||||.||||||||.||||||||||||||..|.||||||||||||||
BPUM_1780___y 571 AGAATGGCTGAAATGGTGATTGGAGAAAAAGTAACGCTTGAAGAAATGGG 620
BSNT_03014 621 TGGCGCCCGTATGCATTGCTCAATCTCCGGCTGCGGAGATATTCTTGCAG 670
.|||||....|||||||||...||.||.||.||.||.||||||.|.||..
BPUM_1780___y 621 CGGCGCAAACATGCATTGCAGCATATCAGGATGTGGTGATATTTTAGCCA 670
BSNT_03014 671 AAACTGAAGAAGAAGCCATACAGCTGGCGCGGGCTTATTTGTCTTACTTT 720
||||.||||||||||||||.||..|.||.||.|..|||||..|||||.|.
BPUM_1780___y 671 AAACAGAAGAAGAAGCCATTCAAATCGCTCGCGACTATTTAACTTACATG 720
BSNT_03014 721 CCGGCAAATTTTCAAGAAAAAGCGCCCATTCATGAGAAAC--GC--CCGC 766
||.||.||.|.|..||||||| ||| |||| || |.||
BPUM_1780___y 721 CCTGCCAACTATACAGAAAAA----CCA--------AAACCGGCAGCAGC 758
BSNT_03014 767 CAAAACACTTCAA--AACTCCGCTTGCC-------GACGTCATTCCGCAA 807
.|||.|||.|.|| |.||..|.|..|| ||| |.|||||..||
BPUM_1780___y 759 AAAAGCACCTAAAGCATCTGAGATGACCATCCAAGGAC-TTATTCCTAAA 807
BSNT_03014 808 AATCAAAACGCACCTTTTGATATGCATGAGCTGATTGAGCGGGTCATAGA 857
...|||||..|.|||||.||||||.||.||||.|||||.....||||.||
BPUM_1780___y 808 GGGCAAAATACCCCTTTCGATATGTATCAGCTCATTGATTTACTCATTGA 857
BSNT_03014 858 TGAAGACTCATTTTTTGAGATCAAAGCCTTATTTG-------------CA 894
|||||..||.||||||||.||||||....|.|||| ||
BPUM_1780___y 858 TGAAGGGTCTTTTTTTGAAATCAAAAAACTGTTTGCCGCAGAGCTGATCA 907
BSNT_03014 895 CCGGAATTATTGACGGGCCTCGCACGAATCCACGGACAGCCTGTCGGCAT 944
|.|||.|| ||| |||||..||||.|||||||||||..|
BPUM_1780___y 908 CAGGATTT-------GGC------CGAATGAACGGGCAGCCTGTCGGTCT 944
BSNT_03014 945 TGTTGCAAACCAGCCGAAGGTAAAAGGAGGCGTCTTATTCCACGATTCAG 994
..||||.||||||||||.|||||||||.||.||..|.|||||.||.||||
BPUM_1780___y 945 GATTGCCAACCAGCCGAGGGTAAAAGGCGGGGTGCTGTTCCATGACTCAG 994
BSNT_03014 995 CAGACAAAGCGGCTAAGTTTATT-ACCTTATGTGACGCTTTTCATATCCC 1043
|.||.|||||.|||||||||||| |.||| ||||||||.|||||||||||
BPUM_1780___y 995 CTGATAAAGCCGCTAAGTTTATTCAGCTT-TGTGACGCCTTTCATATCCC 1043
BSNT_03014 1044 ATTGCTGTTCTTAGCCGATATCCCCGGTTTTATGATTGGCACAAAAGTAG 1093
..|.||.|||.|.||.|||||.||.||.||||||||.||.||||||||.|
BPUM_1780___y 1044 GCTCCTTTTCCTTGCGGATATACCGGGATTTATGATCGGAACAAAAGTGG 1093
BSNT_03014 1094 AACAGGCTGGGATTATCAGACACGGAGCGAAAATGATTTCTGCGATGTCA 1143
||||.|||||.|||||.|||||.||||||||||||||.||.||.||||||
BPUM_1780___y 1094 AACAAGCTGGTATTATTAGACATGGAGCGAAAATGATCTCCGCTATGTCA 1143
BSNT_03014 1144 GAGGCAACTGTTCCAAAACTCTCTGTCATTGTCCGAAAAGCTTACGGGGC 1193
|||||.||.|||||||||.|.||.||||||||.||||||||||||||.||
BPUM_1780___y 1144 GAGGCGACCGTTCCAAAAATATCGGTCATTGTGCGAAAAGCTTACGGTGC 1193
BSNT_03014 1194 GGGGTTGTATGCAATGGCAGGGCCGGCATTTGAACCGGATTGCTGTCTAG 1243
.||.||.||||||||||||||.||.||.||||||||.||.||||||||.|
BPUM_1780___y 1194 AGGTTTATATGCAATGGCAGGACCAGCGTTTGAACCAGACTGCTGTCTCG 1243
BSNT_03014 1244 CGCTCCCAACCGCCCAAATCGCCGTCATGGGCCCTGAGGCAGCTGTAAAC 1293
|.||.|||.|.||.|||||.||.||||||||.||.||.||.||||||||.
BPUM_1780___y 1244 CTCTTCCATCGGCACAAATTGCTGTCATGGGACCCGAAGCGGCTGTAAAT 1293
BSNT_03014 1294 GCTGTCTACGCTAAAAAAATCGCCGAGCTGCCAGAAGAAGAGAGAGCCGC 1343
||||||||.||.||.||.||.|||||..||||.|..|||||||||||.||
BPUM_1780___y 1294 GCTGTCTATGCAAATAAGATTGCCGAATTGCCTGCTGAAGAGAGAGCTGC 1343
BSNT_03014 1344 ATTTATC--AGCAGCAAACGGGAGGAATACAAAGAGGACATCAATATCTA 1391
||||||| || || ||.||..|||||||..||||.||.||.|||||.||
BPUM_1780___y 1344 ATTTATCCAAG-AG-AAGCGCAAGGAATATCAAGAAGATATGAATATATA 1391
BSNT_03014 1392 CCGTCTGGCTTCAGAAATGATCATTGATGCTGTTATCCC---AGCCAATT 1438
....||.||.||.||||||||..|.||.|..||.||||| .|.|.||
BPUM_1780___y 1392 TGAGCTTGCCTCTGAAATGATTGTCGACGGCGTCATCCCGTTTGACCAT- 1440
BSNT_03014 1439 CGCTGCGTGATGAGC--TGGCCAAACGGCTCAAGGC--ATACATGACAAA 1484
|||||..|||||| ||.| |.||..||.|.|| ||.|.| ||||
BPUM_1780___y 1441 --CTGCGAAATGAGCTTTGTC--ACCGATTCCATGCCTATTCCT--CAAA 1484
BSNT_03014 1485 GGAAATGACATTTACCAATCGAAAGCATCCGGTTTATCCGGTGTAA 1530
.||.|||||||||||.|..|||||.||||||||.||||||||.|||
BPUM_1780___y 1485 AGAGATGACATTTACAAGACGAAAACATCCGGTCTATCCGGTCTAA 1530
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