Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03020 and BPUM_1785
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:33
# Commandline: needle
# -asequence dna-align/BSNT_03020___yngI.1.24716.seq
# -bsequence dna-align/BPUM_1785___yngI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03020___yngI-BPUM_1785___yngI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03020___yngI-BPUM_1785___yngI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03020___yngI
# 2: BPUM_1785___yngI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1795
# Identity: 1125/1795 (62.7%)
# Similarity: 1125/1795 (62.7%)
# Gaps: 302/1795 (16.8%)
# Score: 3205.5
#
#
#=======================================
BSNT_03020___ 1 ---ATGGCTGAACTCATCC---ATTCCACAATCGGCAGGCTGCTGGA--A 42
||| |..|.|||||| | ||.||||||...||.||..| |
BPUM_1785___y 1 ATGATG--TCGATTCATCCGCAA----ACGATCGGCTCCCTACTAAAAGA 44
BSNT_03020___ 43 CAAACAGCTGATGC-GTATCCCGATCGAGATGCTGTTGTGTATCCAGACC 91
.|||.|| || || |.|.||.|..|..||.||..|||||||||||||.|
BPUM_1785___y 45 GAAAAAG--GA-GCAGCACCCAGCACATGAAGCCATTGTGTATCCAGAAC 91
BSNT_03020___ 92 G--AAATATCCGCTATACGTACGCTCAA-------TTTGACAGCCTGTGC 132
| .|.|| ||.|||.|.|||| || ||.||.||
BPUM_1785___y 92 GTTCATTA--CGTTATTCATACG---AAGCGTTTTTTAGAGAG------- 129
BSNT_03020___ 133 CGTC----AAACCGCTAAAGGTCTTATGCGGAT--GGGGATTGGAAAAGG 176
||| ||||.|..|||||||||||| |.|| ||.| ||..||||||
BPUM_1785___y 130 -GTCAAGGAAACAGGGAAAGGTCTTATG-GCATTAGGTG-TTCAAAAAGG 176
BSNT_03020___ 177 AGACCACGTCGCCAT-ATGGGCTTCTAATATCCCTGAATGGCT--TGCCG 223
.||||||.|.||||| || |||..|||||.|.||||||||||| |.|
BPUM_1785___y 177 CGACCACATTGCCATCAT-GGCACCTAATGTACCTGAATGGCTCATAC-- 223
BSNT_03020___ 224 TCCAGTTCGCAACTGCG--AAGATCGGAGCCGTGCTCGTAACCGTCAATA 271
|.||.||||| ||||| ...||.|||||.||.||.||.|||||.||||
BPUM_1785___y 224 TGCAATTCGC--CTGCGCTTCTATTGGAGCTGTTCTTGTCACCGTGAATA 271
BSNT_03020___ 272 CCAATTATCAAGCACACGAGCTGGACTACTTGTTAAAGCAATCGGATGCC 321
|.||.|.||||.||||.||.||.|..|||||..|||||||.||.||| .
BPUM_1785___y 272 CGAACTTTCAATCACAAGAACTCGCATACTTACTAAAGCACTCTGAT--A 319
BSNT_03020___ 322 GCCGC--GCTTATTATC----ATGGATTCATACAGGGGCACTTCTTATCC 365
||.|| |||..||||| |.||.|| ||.||
BPUM_1785___y 320 GCAGCATGCTGTTTATCGTTGACGGGTT--TAAAG--------------- 352
BSNT_03020___ 366 AGACATCGTA-AACAG-----TT-------TAATTCCAGAACTGCAAGAA 402
|||||||.|| ..||| || |.||||||||.||.|||..|
BPUM_1785___y 353 AGACATCATATGTCAGGATGCTTGAAGACCTCATTCCAGAGCTTCAAACA 402
BSNT_03020___ 403 GCAAAGCCCGGCCA--ACTGAAATC---TGAAC-GC-TATCCCTTTTTAA 445
||..| ||| || ||.||| |.||| || |.|||.|.|||||
BPUM_1785___y 403 GCTCA------CCAAGAC-GACATCACTTCAACAGCTTTTCCATATTTAA 445
BSNT_03020___ 446 AAA----CGCTGATCTATATTGG--------CAATAAACGGT-TG----G 478
||| || |||||||||| |...|||.||| || |
BPUM_1785___y 446 AAAGTGTCG----TCTATATTGGTGAGCACACGCCAAAGGGTATGCGGAG 491
BSNT_03020___ 479 CTGGCATGTATCATTGGGACGAGACAGAGATATT--------GGCGAAAA 520
|||| ||||| |||| .||.||||
BPUM_1785___y 492 CTGG------------------GACAG---TATTCAAGCTGCTGCCAAAA 520
BSNT_03020___ 521 CAGTGACAGATGCTGAGCTTGAA---GAGA---GAATG--------AACA 556
.| ||.||...||| |||| |||| ||||| .||
BPUM_1785___y 521 GA---ACGGAGAATGA---TGAATGGGAGAAACGAATGGAGGAGCTGAC- 563
BSNT_03020___ 557 GCCTGGATAAAGACAATGTGATTAATATGCAATACACATCAGGAACGACA 606
||||| |.||| ||.|||||.|||||.||.||.|||||.||.||.
BPUM_1785___y 564 GCCTG----ATGAC---GTCATTAACATGCAGTATACGTCAGGGACCACC 606
BSNT_03020___ 607 GGGTTTCCAAAAGGCGTGATGCTGACCCATTTCAA----TGTCATCAATA 652
||.|..||||||||.||.|||||.|.||| |.||| .|||..||||
BPUM_1785___y 607 GGCTACCCAAAAGGTGTCATGCTCAGCCA-TACAAACATCGTCTGCAAT- 654
BSNT_03020___ 653 ACGCTGCTAATATCGCTGAATGTATGGCTTTAACCTC-----TCAAGACC 697
|||..|.|.||||..||.||.||| ||.||| |.|.||||
BPUM_1785___y 655 --GCTAGTCAAATCGGAGATTGCATG-----AAGCTCACACGTGATGACC 697
BSNT_03020___ 698 GCATGTGCATCCCGGTTCCGTTTTTTCACTGCTTTGGATGCGTCCTTGGG 747
|||||||.|||||.||.|||||||||||.||||||||.|..||.|||||.
BPUM_1785___y 698 GCATGTGTATCCCTGTGCCGTTTTTTCATTGCTTTGGGTCTGTTCTTGGT 747
BSNT_03020___ 748 GTTTTGGCATGTGTATCCGTCGG-GGCAGCCATGATACCCGTGCAAGAAT 796
||..||||.|||.|..|....|| |||| |.||.||.|| |||
BPUM_1785___y 748 GTACTGGCTTGTCTCACAAAAGGTGGCA-CGATCATTCC--------AAT 788
BSNT_03020___ 797 TTGATCCCGTTAC-----------CGTCCTTAAAACGGTAGAAAAAGAGA 835
|..||| ||.| |||||||.||||.||.||||||||||
BPUM_1785___y 789 TGAATC---TTTCCACCCAGAGCGCGTCCTTCAAACAGTGGAAAAAGAGA 835
BSNT_03020___ 836 AATGCACAGCGCTCCATGGTGTGCCTACCATGTTTATCGCTGAGCTGCAT 885
|.|||||||..||.||.||.||.||.||.|||||.|||||.|||||..||
BPUM_1785___y 836 AGTGCACAGTTCTTCACGGCGTCCCGACAATGTTCATCGCAGAGCTAGAT 885
BSNT_03020___ 886 CATCCGGATTTTGATGCA--TATGATCTATCGACGCTCCGAACAGGAATC 933
||.|||.|||||.| || ||..||||.||.||..|.||.||.||.||.
BPUM_1785___y 886 CACCCGAATTTTCA--CAAGTACAATCTGTCCACATTACGCACTGGCATT 933
BSNT_03020___ 934 ATGGCCGGCTCTCCCTGTCCAAGTGAAGTGATGAAAGCTGTGATTGAAAG 983
|||||.||.||||.|||||||....|.|||||||||||.||.||||||..
BPUM_1785___y 934 ATGGCAGGATCTCTCTGTCCATCCCATGTGATGAAAGCCGTCATTGAACA 983
BSNT_03020___ 984 GATGGGCATGAAAGACATTACGATCGCCTATGGACAAACCGAAGCCTCGC 1033
.|||||..||||.||..|.|||||.||.||.||.||.||.|||..|||.|
BPUM_1785___y 984 AATGGGTCTGAAGGAGCTCACGATTGCTTACGGCCAGACAGAAAGCTCTC 1033
BSNT_03020___ 1034 CAGTCATTACGCAAACGAGAGCAAATGATTCCTTCATAAGAAGAGTCGAA 1083
|.||||||||.|||||.|||.|..|||||||.||...|||..|.||..||
BPUM_1785___y 1034 CTGTCATTACCCAAACAAGAACGGATGATTCATTTGAAAGGCGGGTTCAA 1083
BSNT_03020___ 1084 ACAACCGGCCGCGCCCTGCCACATACTGAGGTGAAAATTGTAGAACCTGG 1133
|||..||||||.||.||.||.||.|..||.|||||||| .||| |.
BPUM_1785___y 1084 ACAGTCGGCCGGGCGCTTCCTCACATCGAAGTGAAAAT-----CACC-GC 1127
BSNT_03020___ 1134 GACATGT------CAAGAAGTTCAAAGAGGCATGCAGGGAGAGCTGTGCA 1177
|.||.|| .|.|||||.|.||||||....||.||.|||||.||.|
BPUM_1785___y 1128 GCCAGGTACCCCAGATGAAGTACTAAGAGGAGAACAAGGCGAGCTATGTA 1177
BSNT_03020___ 1178 CCCGTGGCTATCACGTCATGAAAGGCTATTATAAAGACAAAGAAGCGACC 1227
|..|.|||||||||||.|||||||||||.||||||.|..|||||| ||
BPUM_1785___y 1178 CGAGAGGCTATCACGTGATGAAAGGCTACTATAAAAATGAAGAAG---CC 1224
BSNT_03020___ 1228 AGAAAAGCAATCA---ATCATGACGGATGGCTGTTTACCGGAGATCTTGC 1274
|.|||.|.|.||| ||.|.|||||.||||||..|||.||||||.|.||
BPUM_1785___y 1225 ACAAATGAAGTCATTGATGAGGACGGGTGGCTGCATACAGGAGATTTAGC 1274
BSNT_03020___ 1275 TGTCATGGATGAAGACGGATACTGCCG--CATCACCGGAAGATTAAAAGA 1322
.|..||||||||.||.||.|| || .| .|||||||||.|..|.|||||
BPUM_1785___y 1275 GGAGATGGATGAGGATGGCTA-TG-TGAAAATCACCGGACGGCTGAAAGA 1322
BSNT_03020___ 1323 TATGCTCATCAGAGGCGGCGAGAACATTTATCCGCGGGAAATTGAAGAAT 1372
||||.|.||.||||||||.||.||..||||.||....||.||||||||..
BPUM_1785___y 1323 TATGATTATTAGAGGCGGGGAAAATGTTTACCCAAAAGAGATTGAAGACG 1372
BSNT_03020___ 1373 TTTTATACCGGCATCCCGCTGTTTTAGATGTACAGGTCGTTGGTGTGCCT 1422
||.|.|||..||||||.||..||.|.||||.|||||||||.|||.|.|||
BPUM_1785___y 1373 TTCTTTACACGCATCCAGCCATTCTTGATGCACAGGTCGTCGGTATTCCT 1422
BSNT_03020___ 1423 GACGCCAAATTCGGGGAGGAAGCTGCAGCCTGGATTAAACTGAAAGACGG 1472
||||..|..|.|||.||.|||||.||.||.|..|||...||.|||.|.||
BPUM_1785___y 1423 GACGAGACTTACGGAGAAGAAGCCGCCGCATTCATTCGGCTCAAACAAGG 1472
BSNT_03020___ 1473 TAAAAGCGTTTCAC-CTGA----TGAG--CTTA--AAGCCTATTGCAAAG 1513
|.| ||| .||| |||| .||| ||| |||.||..||.
BPUM_1785___y 1473 TCA--------CACTGTGACGATTGAGACATTAACAAG-CTACTGTCAAT 1513
BSNT_03020___ 1514 GGAAAATCGCCCGCCACAAAATTCCGCGTTATGTTATTTTT----ACGGA 1559
...||||.||.|||.|||||||||||...||| ||||| ||.||
BPUM_1785___y 1514 CACAAATGGCACGCTACAAAATTCCGAAATAT----TTTTTCATCACAGA 1559
BSNT_03020___ 1560 TGACTATCCGATGACGGCCTCAGGCAAAATTCAAAAATATAAACTGCGAG 1609
|||.|||||.|||||.||||||||.||.||||||||||.|...|| |
BPUM_1785___y 1560 TGAGTATCCAATGACCGCCTCAGGGAAGATTCAAAAATTTCGTCT----G 1605
BSNT_03020___ 1610 AAAAAA----CGATTGAAATGTTCAACCTATCATCAAGTCAATGA 1650
|||||| ||.|||| |.|.||.||| .|.|||
BPUM_1785___y 1606 AAAAAACAGGCGCTTGA-----------TCTAATAAAG-GAGTGA 1638
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.