Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04188 and BPUM_1792
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_04188___ysfC.1.24716.seq
# -bsequence dna-align/BPUM_1792___glcD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04188___ysfC-BPUM_1792___glcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04188___ysfC-BPUM_1792___glcD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04188___ysfC
# 2: BPUM_1792___glcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1515
# Identity: 968/1515 (63.9%)
# Similarity: 968/1515 (63.9%)
# Gaps: 201/1515 (13.3%)
# Score: 2893.0
#
#
#=======================================
BSNT_04188___ 1 ------ATG-------------------ATCACCAAGGATGTAAAGGAGC 25
||| |||| || |||||.|
BPUM_1792___g 1 ATGCGCATGTTAAATTCTGAATTTTTAAATCA------AT-TAAAGAA-- 41
BSNT_04188___ 26 AGCTGATT--CGG---GTCTC-CGGACCAGAAAACTTTGATGACTCGAAT 69
|||| ||| .|||| .|.||.|||.|.| ||.
BPUM_1792___g 42 ----GATTGCCGGTGCATCTCATGTACAAGACAGC------------AAA 75
BSNT_04188___ 70 GCCGGCCGTCTCGTCTATTCATATGATGCGACGCCTCAGTATCAGTCTAT 119
||.|..||.||.|.|||.||.||||||||.||||||.|.|.||||...||
BPUM_1792___g 76 GCTGATCGGCTTGCCTACTCTTATGATGCAACGCCTAATTTTCAGCACAT 125
BSNT_04188___ 120 GCCTGATG---CCGTGATTGCTCCGAGGAATACTGAAGAAGTATCACGCA 166
|||.|||| .|||.| || ||..|.|...||||.|| .|||..|||
BPUM_1792___g 126 GCCAGATGTTATCGTAA--GC-CCACGCACGGCTGAGGA--CATCCAGCA 170
BSNT_04188___ 167 TTTTAACAA-------TTTGCAGCGAACATCGAGTGCCGATCGTTCCAAG 209
|.|| |||||..|..|.|||..||||||||.||.|||||
BPUM_1792___g 171 TATT-----GTTCGGCTTTGCGCCTCATATCAGGTGCCGATTGTGCCAAG 215
BSNT_04188___ 210 AGGATCAGGGACAAACCTGTGCGGCGGCACGTGCCCGACTGAAGGCGGAC 259
||||||.||.||.|||||.||.|..||.||.||.||.||..||||.||||
BPUM_1792___g 216 AGGATCCGGAACGAACCTTTGTGCAGGAACCTGTCCTACACAAGGTGGAC 265
BSNT_04188___ 260 TTGTGCTTCTCTTTAAGCA--CATGAACCAGATTC-TTGAGATTGATGAA 306
|||||.|..|.|||| || .|||||||| |||| |.||.||.||||||
BPUM_1792___g 266 TTGTGATGTTGTTTA--CAAGAATGAACCA-ATTCATCGAAATAGATGAA 312
BSNT_04188___ 307 GAAAATTTAACTGCCACAGTTCAGCCGGGCGTCATTACGTTGGATATGAT 356
|||||.||.|||||.||.||.|||||.|||.|.||.||...|||..|.||
BPUM_1792___g 313 GAAAACTTGACTGCAACGGTCCAGCCTGGCTTGATCACACAGGAACTCAT 362
BSNT_04188___ 357 CCGGGCAGTTGAAAGCAA-AGGTTTATTTTATCCGCCTGACCCGAGTTCT 405
.||.|.|||.| |.|||| |||..|.||.|||||.||.||.||.||.||.
BPUM_1792___g 363 TCGCGAAGTAG-AGGCAAGAGGCCTTTTCTATCCACCAGATCCAAGCTCG 411
BSNT_04188___ 406 ATGAAAATATCAACTATCGGGGGCAACATCAATGAAAATTCCGGCGGGCT 455
||||||||.||.||..|.||.|||||.||.|||||||||||.||.|||||
BPUM_1792___g 412 ATGAAAATTTCGACGTTAGGCGGCAATATTAATGAAAATTCAGGTGGGCT 461
BSNT_04188___ 456 CCGCGGATTAAAATACGGCGTCACCCGCGACTATGTTATTGGACTGGAGG 505
.||.||.||||||||.|||||.||..|.||.|||||..|||||||.||.|
BPUM_1792___g 462 TCGAGGTTTAAAATATGGCGTGACGAGAGATTATGTACTTGGACTTGAAG 511
BSNT_04188___ 506 TTGTGCTCGCAAATGGTGACATCATCCGCACCGGCGGAAAACTCGCAAAG 555
|.||.||..||||.||.||||||||....||.|||||.||.||||||||.
BPUM_1792___g 512 TGGTTCTGCCAAACGGCGACATCATTAAAACGGGCGGTAAGCTCGCAAAA 561
BSNT_04188___ 556 GATGTGGCCGGATACGACCTCACACGTCTTTTTGTCGGCTCAGAAGGAAC 605
||.||||||||.||.||..|.||.|||.|.|||||.||.|||||||||||
BPUM_1792___g 562 GACGTGGCCGGGTATGATATGACCCGTTTATTTGTTGGATCAGAAGGAAC 611
BSNT_04188___ 606 ACTCGGCATTGTGACAGAGGCAATCG-TCAAGCT-----CG-TTCCAAAG 648
.|||||.||.||.||.||.||.| || |.||||| || |||||
BPUM_1792___g 612 GCTCGGAATCGTTACTGAAGCTA-CGCTAAAGCTTTTGCCGCTTCCA--- 657
BSNT_04188___ 649 CCTGAAACAAAAAAGACGCTGCTTGCCCTATATGAAAACAT---CGATGC 695
|||||.|||.|.|||.|||||..|.|||||||||.|.| .||.||
BPUM_1792___g 658 ---GAAACTAAACAAACGATGCTTTGCTTATATGAAAGCCTTGAGGAAGC 704
BSNT_04188___ 696 CGCTGC-TCAAACGGTATCAGACATCATTGCCGCAAAAATCATACCCGCC 744
.||||| ||| ||.||.|..||.|||||.|.|...|||||.||||||
BPUM_1792___g 705 AGCTGCATCA----GTTTCGGCGATTATTGCAGAACGTATCATCCCCGCC 750
BSNT_04188___ 745 ACGCTTGAATTTCTCGACCAGCCTACACTTTTGGTGATTGAGGATTATGC 794
||..|.||||||.|.||.|||||.|||||....||..||||.||.|.|||
BPUM_1792___g 751 ACATTAGAATTTATGGATCAGCCGACACTAGAAGTCGTTGAAGACTTTGC 800
BSNT_04188___ 795 CAAAATCGGACTGCCAACAAACG--CAAAGGCGGTTCTATTAATTGAGCA 842
||||||.||.||.||.||..||| ||| |||||.||||||||.||.||
BPUM_1792___g 801 CAAAATTGGCCTCCCGACTGACGTTCAA--GCGGTACTATTAATCGAACA 848
BSNT_04188___ 843 AGACGGACCGCTTGAAATC--------GTGGCACGGGATATGGAAAAGAT 884
.|||| |.|||| ||..|.||.||||||.||||.||
BPUM_1792___g 849 GGACG--------GCAATCCTGAGGCTGTTTCCCGTGATATGCAAAACAT 890
BSNT_04188___ 885 TG---AGGCCATT--------------TGCAAAAAAGGCGACGCCGTTTC 917
.| ||| || |||||||.|.|.||
BPUM_1792___g 891 CGCAAAGG---TTTGTCAACAGCACGGTGCAAAAGAAGTGA--------- 928
BSNT_04188___ 918 CGTTCAGACCGCACAAACAGAGGAGGAGGCATTCGCCC---TGACTGAAG 964
|.|..|||||..|.||.||.||.|||...|||| |.|| ||
BPUM_1792___g 929 -----ATATTGCACATTCTGAAGAAGAAGCAAGTGCCCTTTTAAC---AG 970
BSNT_04188___ 965 CACGGCGCTCTGCACTTTCTGCCCTAGCCCGCCTCAAG-CCGACGACGAT 1013
|..|.||..|.||..|.|||||.||.||||| .|.||| ||.|||||.||
BPUM_1792___g 971 CGAGACGAGCCGCTTTATCTGCTCTCGCCCG-TTTAAGCCCTACGACCAT 1019
BSNT_04188___ 1014 TTTAGAGGATGCGACCGTTCCTCGCTCAGAAATCGCCAATATGGTTAAAG 1063
||||||.|||||.||.||.||.||.||.|||||.||.||.|||||....|
BPUM_1792___g 1020 TTTAGAAGATGCCACAGTCCCCCGTTCTGAAATTGCGAACATGGTACGGG 1069
BSNT_04188___ 1064 CGATTAATGATATTGC-------TGCTAAATATGATATTTCCATCTGCAC 1106
|.|||.|.||.||||| |.|.|| .|||.| |||||.||
BPUM_1792___g 1070 CAATTGAAGACATTGCGAGAGAGTACGAA--GTGAAA-----ATCTGTAC 1112
BSNT_04188___ 1107 CTTTGGCCATGCGGGAGACGGGAACCTTCACCCGACATGCACGACAGACA 1156
.|||||.|||||.||.|||||.||.||.|||||.||.||..|.||.||..
BPUM_1792___g 1113 TTTTGGTCATGCAGGCGACGGAAATCTGCACCCTACTTGTGCAACTGATG 1162
BSNT_04188___ 1157 TAAGAAATGAGGATGAAATGGAGCGTGTCGAACAGGCCTTT---GCCGAG 1203
.|||||||||.||.||||||.|.||.||.|||.|.|||||| |||
BPUM_1792___g 1163 CAAGAAATGAAGAAGAAATGAAACGGGTTGAAGAAGCCTTTCAGGCC--- 1209
BSNT_04188___ 1204 ATTTTTGAGAAAGCGATTGAACTTGGCGGGACGATAACCGGAGAGCACGG 1253
||||||||.|||||..|....||||||||.||.||.||.||.||.||.||
BPUM_1792___g 1210 ATTTTTGAAAAAGCAGTCTCCCTTGGCGGCACCATTACAGGTGAACATGG 1259
BSNT_04188___ 1254 AGTCGGGGCAATGAAAGCGCCTTACTTGGAGATGAAGTTGAAAAAAGAAG 1303
.||.||....||||||||.|||||.|||||..|.|||.|.||||||||||
BPUM_1792___g 1260 CGTAGGTCTCATGAAAGCCCCTTATTTGGAACTCAAGGTCAAAAAAGAAG 1309
BSNT_04188___ 1304 GCATTGATGCGATGAAAGCGTTGAAAGCGGCATTTGACCCCCGGAACATA 1353
|.||.|.|||.|||||||||.|.|||...||..|.|| .||.|.|.|||
BPUM_1792___g 1310 GAATCGCTGCAATGAAAGCGATCAAACAAGCGCTAGA--TCCAGCAAATA 1357
BSNT_04188___ 1354 T--TAAATCCGGGCAAAGTGTTTGCGAAAGATGCCAGAAAACGTGTGGTG 1401
| |.|||||.|..||.|||||||..||||..||.||.||.||.||||||
BPUM_1792___g 1358 TCATGAATCCTGATAAGGTGTTTGGAAAAGCAGCAAGGAAGCGAGTGGTG 1407
BSNT_04188___ 1402 GCGGAAA---GATGA 1413
| .||||
BPUM_1792___g 1408 ------ATCTCATGA 1416
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