Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02075 and BPUM_1801

See Amino acid alignment / Visit BSNT_02075 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:32
# Commandline: needle
#    -asequence dna-align/BSNT_02075___yjjA.1.24716.seq
#    -bsequence dna-align/BPUM_1801___hemD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02075___yjjA-BPUM_1801___hemD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02075___yjjA-BPUM_1801___hemD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02075___yjjA
# 2: BPUM_1801___hemD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 882
# Identity:     546/882 (61.9%)
# Similarity:   546/882 (61.9%)
# Gaps:         129/882 (14.6%)
# Score: 1427.0
# 
#
#=======================================

BSNT_02075___      1 ATGGGAAAAGGGTTA-CTTGGAAAACGCGTGGCAATCGGTGGCTCACGAA     49
                     .||.|.|||||.||| ||.|.|||||| .|.||.||..||||..|..|||
BPUM_1801___h      1 TTGAGTAAAGGCTTATCTGGAAAAACG-ATTGCCATTTGTGGAACGAGAA     49

BSNT_02075___     50 AAACGGAAGAAATTAGTACAATCATTGAAAAACAGGGCGGAATACCTGTC     99
                     ||||.||||||||..|||||.|..|.|||||.||.||.|||..|.||||.
BPUM_1801___h     50 AAACAGAAGAAATGCGTACACTTGTCGAAAAGCAAGGGGGACAAGCTGTT     99

BSNT_02075___    100 ATCCGGCCTCTCCAAGGTACAGTTTACTTAG-CAGAGAAGCAGGTGGAGC    148
                     ||.||..||||.|||||.||.||.|..|||| ||.|| ||.||.|..|||
BPUM_1801___h    100 ATTCGTTCTCTTCAAGGAACCGTATTTTTAGCCAAAG-AGGAGTTAAAGC    148

BSNT_02075___    149 C-GGATTTGCGGACGTTTGCGGAAGAAAAA----GCTGACTGGGTCATTT    193
                     | ||..||| ..||.||||    .||||||    ||.||.|||||..|||
BPUM_1801___h    149 CAGGCATTG-AAACTTTTG----TGAAAAAAGGTGCCGATTGGGTGGTTT    193

BSNT_02075___    194 TCACGACAGGCATCGGGTTGGAGACTCTTGTCGATATGGCAGAGAAAATT    243
                     |.||.|||||.|||||....||.||..|..|.||.|..||||| |.|..|
BPUM_1801___h    194 TAACCACAGGTATCGGAACTGATACATTAATTGAGAGTGCAGA-AGAGCT    242

BSNT_02075___    244 GGACTGA-AAGATGAGTTTCTGCAGGCCATTCGCCAAGCGAAAGCGGCA-    291
                     .||.|.| .|||.||.|||.||||   .|||   |.|.|.||.|| .|| 
BPUM_1801___h    243 TGATTTAGGAGAAGAATTTATGCA---TATT---CTATCAAATGC-ACAA    285

BSNT_02075___    292 --TGC----CGGGGATACAAAACGCTGT-CTGCGCTGAAAAAGCTTGGAA    334
                       |||    .|.||||||||||| .|.| ||||.||.|||||.|..||||
BPUM_1801___h    286 ATTGCTTCAAGAGGATACAAAAC-TTATGCTGCACTCAAAAAACGCGGAA    334

BSNT_02075___    335 -TCACACCGGAAGCTTCGGATGAAGACGGGACAACAAGAGGCTTAATCCG    383
                      ||| .||.||.|..||.||||||||.||||||..|     |.|.|||.|
BPUM_1801___h    335 TTCA-GCCAGACGTGTCTGATGAAGATGGGACAGTA-----CGTGATCTG    378

BSNT_02075___    384 TTC------CTTGGAGCCTCACGACTTTTCAGGAAAAACAGTCATGGTGC    427
                     .||      ||||.||.| .|.||.|||..|||.|||...||||||||||
BPUM_1801___h    379 ATCGCAAAGCTTGAAGGC-AAAGAGTTTCAAGGCAAACGTGTCATGGTGC    427

BSNT_02075___    428 AGCTTCATGGCGAAAAAGCGCCGGCTCTCATGGCA-TTTCTTGAAGAAAA    476
                     ||||.||.||.|||||.||.|||||.||||| .|| |||.|..|.|||||
BPUM_1801___h    428 AGCTGCACGGGGAAAATGCTCCGGCCCTCAT-CCAGTTTTTACATGAAAA    476

BSNT_02075___    477 AGGCGCGTCTGTCCTGCCGATTCTGCCTTATCAGCACATCCCGCCGGAGG    526
                     |||.||...|||..||||..||.|.|||||||||||||..||.||.||  
BPUM_1801___h    477 AGGGGCAGATGTATTGCCACTTTTACCTTATCAGCACACACCACCTGA--    524

BSNT_02075___    527 AGGAAACGGTGGAGCAGTTATGC--CGAGAGCTGATGAACGATG---AGG    571
                     |..|||.|..|.||.|....|||  |.|||   .|||||.||.|   |.|
BPUM_1801___h    525 ACCAAAAGCCGCAGAAACATTGCTTCAAGA---AATGAAAGACGGAAATG    571

BSNT_02075___    572 TCGATGCCGTTTGTTTTACAACGGCCATTCAGGT--TCGTTCCCTGTTTG    619
                     ||.|.|||||.|||||||||||.||..|||||||  .||   |||.|||.
BPUM_1801___h    572 TCCACGCCGTCTGTTTTACAACCGCTGTTCAGGTACACG---CCTTTTTC    618

BSNT_02075___    620 ATTTT----GCCAA--GGGGCGAGGTTATATCAATGAAGTGAAGAA----    659
                     |..||    ||.||  ||||             |.|||..||||||    
BPUM_1801___h    619 ACGTTAGCAGCAAAATGGGG-------------AAGAAAAGAAGAACTTC    655

BSNT_02075___    660 ----GGTATTCGA--AGAACGCGCCATCGCAGCTGCTGTCGGAAAAGTGA    703
                         |.||||.||  ||.|||..|  |.||||..|||||.||||||||.|
BPUM_1801___h    656 AAGCGCTATTTGAGCAGCACGTAC--TGGCAGTAGCTGTTGGAAAAGTCA    703

BSNT_02075___    704 CTGCTGAAGCACTGCGGGAAGAGGGCATT-ACGAGACTGCTTGCGCCAGA    752
                     |.||||||||..|....|||||||||||| || ||..|.|||.| ||.|.
BPUM_1801___h    704 CAGCTGAAGCTTTAAAAGAAGAGGGCATTGAC-AGGATTCTTAC-CCCGT    751

BSNT_02075___    753 GA-TTGAGCGGATGGGTGCGATGATTGTTGAGCTGGCCAAGTAT-----T    796
                     .| |||||.|.|||||.||.||||||.|.|        ||.|||     |
BPUM_1801___h    752 CACTTGAGAGAATGGGCGCAATGATTATGG--------AATTATCTCAAT    793

BSNT_02075___    797 ATGAAGAAAAGGAATAA---------------    813
                     || |.|||||  ||.||               
BPUM_1801___h    794 AT-ATGAAAA--AACAATCCTCACACTCATAG    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02075 and BPUM_1801

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
