Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03040 and BPUM_1806
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:33
# Commandline: needle
# -asequence dna-align/BSNT_03040___yoeA.1.24716.seq
# -bsequence dna-align/BPUM_1806.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03040___yoeA-BPUM_1806.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03040___yoeA-BPUM_1806.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03040___yoeA
# 2: BPUM_1806
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1474
# Identity: 944/1474 (64.0%)
# Similarity: 944/1474 (64.0%)
# Gaps: 188/1474 (12.8%)
# Score: 2746.5
#
#
#=======================================
BSNT_03040___ 1 ATG--GAAACATCACAA-GAACCTCTTGTAACTCAAAAGAAAAGCAAACC 47
||| |..|.||.|||| .||.||.|.|||| |||||
BPUM_1806 1 ATGACGTTAGATAACAATCAATCTTTAGTAA--------------AAACC 36
BSNT_03040___ 48 ATCAGTTTGGCGGTCGATGTCACTCTTTT-TAGTGCCGCTTCTGCTGAGC 96
|| |||.|| |||| |.||.||||||.||||.|||
BPUM_1806 37 AT----------GTCCAT-------TTTTCTCGTCCCGCTTTTGCTTAGC 69
BSNT_03040___ 97 AATGTGCTGCAATCAGTCGGCCAGCTAGTCGGGAT-GATGG---CTGTAG 142
|||.|..||||||||.||||.|||||.|| || .||.| .|||.|
BPUM_1806 70 AATATTTTGCAATCAATCGGACAGCTTGT----ATCCATCGTTCTTGTCG 115
BSNT_03040___ 143 GCAGATGGCTTGGTGTTGATGCAGTGGCAGCTGTATCATCCTTTTTCCCG 192
||||||||.|.||.|..||||||||.||.||..|.||..|.||.||.|||
BPUM_1806 116 GCAGATGGATCGGAGAGGATGCAGTAGCTGCCATTTCTGCATTCTTTCCG 165
BSNT_03040___ 193 TTATTTTTTCTTTTAA----TCTCATTTACGATTGGGATCGGTTCAGGTA 238
.|||||||||.| |.||.|||.|.|||||.||.||.||.||||
BPUM_1806 166 ----CTTTTCTTTTTACTCGTTTCTTTTTCCATTGGAATTGGATCGGGTA 211
BSNT_03040___ 239 GTTCGATTCTGATCGGACAAGCTTACGGAGCGAAAAATGAGGAACGGCTA 288
||||.||.||||||||||||||.||.|||||.||||||||..|..|..||
BPUM_1806 212 GTTCAATCCTGATCGGACAAGCGTATGGAGCAAAAAATGAACAGAGATTA 261
BSNT_03040___ 289 AAGGCTGTTGTCGGGACGACACTCACGTTTACATTTTT-ATTAGGCGTTG 337
||.|...||.||||.|||||.||..|.||.||.||||| ||..|.|.||.
BPUM_1806 262 AAAGAAATTATCGGCACGACGCTTTCATTCACTTTTTTGATCGGTCTTTC 311
BSNT_03040___ 338 TGTTAGCCGTTATCGGCAGTATTTTCACCTTGGATATCCTTCGTTTA--- 384
| |||||..|.||.||..||.|||||.||..|||.||| |||
BPUM_1806 312 T-TTAGCAATCATTGGAGGTTTTTTCGCCACGGACATC------TTAAAC 354
BSNT_03040___ 385 ---ATGGGAACACCTGAAAATGTCATTCATGTCAGCGCTAACTATGCACG 431
|||||.|||||||..|||.||.|..|.|..||.||....|||||..|
BPUM_1806 355 CTCATGGGGACACCTGCGAATATCGTGGAAGAAAGTGCGGCTTATGCCAG 404
BSNT_03040___ 432 TATTTTATTTTATGCT--ATGCCGTTTATGTTTTTATATTTTGCATATAC 479
.|||.|| ||.|| || |||||..|..|.|||.|.|||||||..||.||
BPUM_1806 405 AATTCTA-TTCAT-CTCAATGCCCATCTTATTTCTTTATTTTGTTTACAC 452
BSNT_03040___ 480 TACCTTTTTGCGCGGAACAGGAGATTCCAAGACACCGTTTTAT------A 523
.|||||..||||.|||||.||.|||||.||.|||||.|||||| |
BPUM_1806 453 AACCTTCCTGCGAGGAACTGGGGATTCGAAAACACCTTTTTATTTCTTAA 502
BSNT_03040___ 524 CGCTGATTGTGAGCACGGTCATC-AACATCGCGCTTT-----TGCCTGTT 567
||||| ||.||.| ||.| ||.|| ||| ||||..||
BPUM_1806 503 ---TGATT---AGTACAG-CAACGAATAT-----TTTAATGCTGCCAATT 540
BSNT_03040___ 568 TTAATCCTTGGCATGTTTGGTTTTCCGAAACTGGGCATATACGGCTCGGC 617
|||.|..|||||..|.|.||..|.|||....|.||..||||||||.|.||
BPUM_1806 541 TTATTATTTGGCTGGCTCGGACTGCCGGCGTTCGGTTTATACGGCGCTGC 590
BSNT_03040___ 618 ATATGCAACTGTCATTTCCACGATTGCGAC-TTTTCTCGTGTTAATGGTG 666
.|||||..||||.|||||.||.||||.||| |||.||..|.|..|| .|.
BPUM_1806 591 GTATGCTTCTGTAATTTCAACCATTGTGACGTTTACTATTCTACAT-ATC 639
BSNT_03040___ 667 TATTTACGAAAGCGAAAACACCCGCT--GCAATTTGATAAAACAGT---- 710
||.|||...|||..|||.|||||||| ||| ||||||.|.|.||
BPUM_1806 640 TACTTATATAAGACAAAGCACCCGCTTCGCA--TTGATACATCGGTTAGA 687
BSNT_03040___ 711 --GCGTCGTTATT--TGAAAATGGAT------AAGGAACTGCTGGTTCTC 750
||.| ||||| |||||..|||| || ||| .||.|
BPUM_1806 688 AAGCAT--TTATTGATGAAAGGGGATTTACTAAA--AAC-----ATTAT- 727
BSNT_03040___ 751 CTGCTGCGT----CTTGGGGTCCCAGCAAGCATCAATATGATTCTTGTCT 796
| |||.|..|.|||.|||||||.|||||||||||..|.|
BPUM_1806 728 --------TAAAACTTAGCATTCCATCAAGCATTAATATGATTCTCATTT 769
BSNT_03040___ 797 CATTATCAGAGATAGCGGTTATTTCATTCGTCAATCATTACGGCTCTAAT 846
|.||||||||.||.||.||||||||.|||||||||.||||.||.||..|.
BPUM_1806 770 CCTTATCAGAAATTGCCGTTATTTCTTTCGTCAATGATTATGGGTCACAG 819
BSNT_03040___ 847 GCAACAGCTGCATACGGAGTGGTCAACCAGGTGGCCAGCTATGTACAGAT 896
||.||.|||||.||.||.||.|||||.||.||.|..||||||||.|||||
BPUM_1806 820 GCGACTGCTGCGTATGGCGTTGTCAATCAAGTTGTGAGCTATGTGCAGAT 869
BSNT_03040___ 897 GCCGGCCGTCAGCCTTGGTATTGCGGTTTCTATTTTCGCTGCGCAATCGA 946
||||||.||.||.||.||.|||||.||.||.||.||.||.||.||||..|
BPUM_1806 870 GCCGGCGGTAAGTCTCGGCATTGCAGTCTCGATCTTTGCAGCTCAATTCA 919
BSNT_03040___ 947 TCGGGGCAAACGAGT-TTGACCGCTT-AAAGCAGGTCAT-----TCGCGT 989
||||.|| |..||.| |..||||||| |||| |.||.|| ||
BPUM_1806 920 TCGGTGC-AGGGAATATCAACCGCTTGAAAG-ATGTAATAAAAATC---- 963
BSNT_03040___ 990 GGGGATTTGGCTGAATTATATCATTGGCGGCGTACTGATCATACTGATC- 1038
|||.|..||||.||||....|||.||||| |.|.||.||..|.|||
BPUM_1806 964 -GGGTTAGGGCTCAATTTCGCCATAGGCGG---ATTCATTATTATCATCG 1009
BSNT_03040___ 1039 --TATGTTTTTTCACATCAGATTTTGTCGTTATTTTTAACCGA-GCAAGA 1085
|||.|.|||.|||..||||||||.||..|.||||||||.|| .|.| |
BPUM_1806 1010 TTTATCTCTTTGCACCACAGATTTTATCTATCTTTTTAACAGATTCTA-A 1058
BSNT_03040___ 1086 GACGCTTTACATTGCACA--------CCGTCTTTTGATGATTACATTGTG 1127
||||.||.|||||||..| .|||| ||||||||.||
BPUM_1806 1059 GACGATTGACATTGCCTATAGCTTAGTCGTC--------ATTACATTATG 1100
BSNT_03040___ 1128 GAGTTATTTGCTGTTTGGAAATGCCCAAATTATTTCTGCAACGATGCGGG 1177
|||||||.|..|.|||||||..|||||||||.||.||||.||||||.|.|
BPUM_1806 1101 GAGTTATCTTATTTTTGGAACAGCCCAAATTGTTGCTGCCACGATGAGAG 1150
BSNT_03040___ 1178 CAAGCGGAACAGTTTTATGGCCGACCGTCATCAGTATTTTTGCAATCTGG 1227
||||.|||||||||||||||||.||..||.|.|||||||...|.||||||
BPUM_1806 1151 CAAGTGGAACAGTTTTATGGCCAACGATCTTTAGTATTTGCTCCATCTGG 1200
BSNT_03040___ 1228 GGAGTAGAGGTGCCTGTCGCTTTCGTCCTTTCTCACTATACAAAGCTTGA 1277
...|||||.||.||.||.||||..||..|.||.|||||.|||...||||.
BPUM_1806 1201 CTTGTAGAAGTACCAGTTGCTTATGTGTTATCGCACTACACATCCCTTGG 1250
BSNT_03040___ 1278 AATACTCGGCGTCTGGGTTGGTTATCCAGCTGCGTTTGCCGTCAGCTTGC 1327
.||....|||.|.|||.||||.||.||.||.||.||....||.|.|||.|
BPUM_1806 1251 TATCAAGGGCATATGGATTGGCTACCCTGCGGCTTTCTTTGTGAACTTAC 1300
BSNT_03040___ 1328 T-GTTGATTTATGGGTATTATCAATTCGTCTGGAAAAAGAAACAAAT--- 1373
| .||.| .|||||.||.|||||..|.||||||||.||.|||||.||
BPUM_1806 1301 TCCTTCA-ATATGGCTACTATCAGCTGGTCTGGAAGAAAAAACAGATTGT 1349
BSNT_03040___ 1374 --CACACGT---CTCATCCAATAG 1392
|.|..|| .|||| ||
BPUM_1806 1350 TGCGCTTGTGCAGTCAT--AA--- 1368
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