Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00581 and BPUM_1811
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:23
# Commandline: needle
# -asequence dna-align/BSNT_00581___nasD.1.24716.seq
# -bsequence dna-align/BPUM_1811___nasD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00581___nasD-BPUM_1811___nasD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00581___nasD-BPUM_1811___nasD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00581___nasD
# 2: BPUM_1811___nasD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2544
# Identity: 1736/2544 (68.2%)
# Similarity: 1736/2544 (68.2%)
# Gaps: 249/2544 ( 9.8%)
# Score: 5512.0
#
#
#=======================================
BSNT_00581___ 1 ATGGGAAAAAAACAGCTAGTTCTTGTTGGTAATGGAATGGCCGGGGTAAG 50
|| ||||.|||.| ||.||..|.||.||.||.||.|||||.||..|..|
BPUM_1811___n 1 AT--GAAAGAAAGA-CTCGTATTAGTGGGGAACGGTATGGCTGGTATTCG 47
BSNT_00581___ 51 GGCCATTGAAGAGATACTGAGTGTTGCTAAA-----------GACGAGTT 89
|..|||.|||.|.|| || |||| .|||| ||
BPUM_1811___n 48 GAGCATCGAAAACAT--------TT--TAAAAATGGACAGCGAACGA-TT 86
BSNT_00581___ 90 TCAGATCACAATTTTCGGAGCCGAACCGCATCCCAATTACAACCGAATCC 139
|.||||.||..|.||.|||..||||||||||||.||.||.|||||.||.|
BPUM_1811___n 87 TGAGATGACGGTATTTGGAAGCGAACCGCATCCTAACTATAACCGGATTC 136
BSNT_00581___ 140 TTTTGTCAAAAGTGCTTCAAGGCGATACAGAT-ATTAAAGATATTACGTT 188
||||.|||||.|||||||||||.||||| ||| .||.||||.|||||..|
BPUM_1811___n 137 TTTTATCAAAGGTGCTTCAAGGAGATAC-GATGGTTGAAGACATTACACT 185
BSNT_00581___ 189 AAACGATTGGGACTGGTACGAAGAAAACAACATTCAATTGTATACAAATG 238
||||||||||.|||||||.||.|...|..|.|||||..|.|.||||||||
BPUM_1811___n 186 AAACGATTGGAACTGGTATGAGGCGCATGATATTCAGCTTTTTACAAATG 235
BSNT_00581___ 239 AAACAGTCATCAAAGTGGACACGGAAAACAAAACAGTCATCACAGATGCA 288
||||..|..|.||.||.||.||.||||||.|||||||||.||..||| ||
BPUM_1811___n 236 AAACCATTGTGAAGGTCGATACAGAAAACCAAACAGTCACCAGTGAT-CA 284
BSNT_00581___ 289 --GACAGAATCCAGCCTTACGACGAATTGATCCTGGCGACAGGCTCGCTC 336
||| |.|.|..||||||.|||...|||||..|.||.||||||||.||.
BPUM_1811___n 285 AGGAC-GCACCGTGCCTTATGACCGGTTGATTTTAGCTACAGGCTCCCTA 333
BSNT_00581___ 337 CCTTTTATCCTTCCGATTCCGGGCGCAGACAAAAAAGGCGTCAC-AGCTT 385
||.||||||||.||||||||.||....||.||||||||.||.|| .||||
BPUM_1811___n 334 CCGTTTATCCTGCCGATTCCAGGAAGTGATAAAAAAGGTGTGACGGGCTT 383
BSNT_00581___ 386 TCCGGGACA-TAAAAGATACAGACACAATGCTCACCGCGTCAAAACAA-T 433
|| ||||| |..||||||||||...||||.|.|..||.|| ..|||| |
BPUM_1811___n 384 TC--GGACATTGCAAGATACAGAGGAAATGGTGAGTGCCTC-TCACAAGT 430
BSNT_00581___ 434 ATAAAAAAGCAGCCGTCATCGGCGGAGGACTTCTTGGTTTGGAAGCCGCT 483
|.|||||||||||||||||.||.||.|||||||||||..|||||||.||.
BPUM_1811___n 431 ACAAAAAAGCAGCCGTCATTGGAGGCGGACTTCTTGGACTGGAAGCAGCA 480
BSNT_00581___ 484 CGCGGACTGCTGAATCTT-GGCATGGACGTGTCCGTCATCCACCTC--GC 530
|||||.||.||.|| ||| ||||||||.|||...|||||.|||||| .|
BPUM_1811___n 481 CGCGGCCTACTTAA-CTTAGGCATGGAAGTGAATGTCATACACCTCTGTC 529
BSNT_00581___ 531 CCCATTCCTGATGGAGCGCCAGCTTGATGCAACGGCAGGACGCCTGCTGC 580
|||||| |.|||||.||||||||.||..|.||.|||||.|..||.||.|
BPUM_1811___n 530 CCCATT--TAATGGAACGCCAGCTAGACCCTACTGCAGGTCAGCTTCTCC 577
BSNT_00581___ 581 AAAACGAGTTAGAAAAACAAGGTATGACCTTTTTACTTGAAAAGCAAACC 630
||||.|..|||||..||||.||.||||.|||.|||||.|.||||.|.||
BPUM_1811___n 578 AAAAAGCATTAGAGGAACAGGGCATGAACTTCTTACTAGGAAAGAAGAC- 626
BSNT_00581___ 631 GAA--GAAATTGTTGGTG--ACGATCGTGTCGAAGG--CCTCCGTTTCAA 674
|| ||.|||.|.||.| ||.| |.||.||||| ..||..|||||
BPUM_1811___n 627 -AACTGAGATTTTAGGAGATACAA--GAGTTGAAGGATTATCATTTTCA- 672
BSNT_00581___ 675 GGATGGCACAAGCA-TTGAAGCTGATTTAGTGGTCATGGCTGTCGGCATC 723
||||||.||| || ||||..|.||..|.||.|||||||||||.||.||.
BPUM_1811___n 673 -GATGGCTCAA-CACTTGAGACAGACCTCGTCGTCATGGCTGTAGGAATT 720
BSNT_00581___ 724 CGCCCAAATACAACGCTCGGGGCCGA---GAGCGGCATTCCGGTTAACCG 770
...||||.||.||.||| .||.|| .||.||..||...||.|||..
BPUM_1811___n 721 AAACCAAGTAAAATGCT---TGCAGAAATAAGTGGACTTGAAGTGAACAA 767
BSNT_00581___ 771 CGGCATCATCGTCAATGATTATATGCAGACTGAAA---TCCCGCACATTT 817
.||.||.|||||.|||||||..|||.|.|| || |.||...|||||
BPUM_1811___n 768 AGGTATAATCGTGAATGATTTCATGGAAAC---AAGTGTACCAGGCATTT 814
BSNT_00581___ 818 ACGCGGTCGGCGAATGTGCCGAGCACCGAGG--AATCGCCTACGGGCTTG 865
|.||.|||||.|||||||..||||||.|.|| ||.|| |||||.||||
BPUM_1811___n 815 ATGCCGTCGGAGAATGTGTAGAGCACAGGGGACAAACG--TACGGTCTTG 862
BSNT_00581___ 866 TGGCGCCGCTCTATGAACAGGCAAAAGTGCTGGCGAAGCATATTTGCGGC 915
|.||.||..|.|||||.||.||.||.|||||.||...||||||.||.|.|
BPUM_1811___n 863 TTGCTCCTTTATATGACCAAGCGAATGTGCTTGCTGGGCATATATGTGAC 912
BSNT_00581___ 916 ATCGAA-----------ACAAACCCGTATGAGGGCTCCGTTCTCTCCACA 954
|| ||| ||||| ||.||.||..|.||.|||
BPUM_1811___n 913 AT-GAACCCTGCCCCATACAAA----------GGATCTGTGATGTCAACA 951
BSNT_00581___ 955 CAGTTAAAGGTATCGGGCGTCGAGGTTTTCTCTGCCGGGGACTTTGATGA 1004
|||.|.||.||.||.||.||.||.||.||.||.|||||.||.|||..|||
BPUM_1811___n 952 CAGCTGAAAGTGTCAGGAGTTGACGTATTTTCCGCCGGTGATTTTATTGA 1001
BSNT_00581___ 1005 ATCAGAGGACAAAAAAGCGATTAAAGTCTTCGATGAGCAGGACGGCATCT 1054
|...||.||.|||||||||||.|||.|.||.|||||.||..|.|||||.|
BPUM_1811___n 1002 AAACGATGAGAAAAAAGCGATCAAAATTTTTGATGATCAAAAAGGCATTT 1051
BSNT_00581___ 1055 ATAAAAAAATTGTCCTGAGAGACAACAAAA-----TTGTCGGTGCTGTTT 1099
|..|||||.|.|||.| .||.||||| |.||.|||||.||..
BPUM_1811___n 1052 ACCAAAAACTAGTCTT-----CCAGCAAAATCGATTAGTAGGTGCCGTCA 1096
BSNT_00581___ 1100 TATTCGGTGACAGCAGCGAAGGCAATCGCCTGTTTTC-TATGATTCAAAA 1148
|.||.||.||.|..||.||.||....|||||.||.|| || .|||..|||
BPUM_1811___n 1097 TGTTTGGAGAAACAAGTGATGGACCCCGCCTATTCTCGTA-CATTAGAAA 1145
BSNT_00581___ 1149 AG----AAGCCGATATCTCTGA-----AACCTCTAAAATATC-AATCTTA 1188
|| | |||||.||.|| || |||.|.|| ..|||.|
BPUM_1811___n 1146 AGGGATA----GATATGTCGGATAAGGAA-----AAAGTGTCTGTTCTAA 1186
BSNT_00581___ 1189 CAGCCTCTCAACCAAGAAGCAGGCACAAGCATCACCGCAGCGA-TGAGCG 1237
| |||| ||..|.|.|||.|||| |..||| ||| |||..|
BPUM_1811___n 1187 C-----CTCA---AATGATCCGGCGCAAG----AAAGCA-CGATTGAAAG 1223
BSNT_00581___ 1238 --------ACGATGAAATCATCTGCGGCTGTAACGGCGTGTCAAAAGGTG 1279
||||..|.|||.|.||||||||||||||.||.|||||.|||.
BPUM_1811___n 1224 TATGTCAAACGACCATATCGTTTGCGGCTGTAACGGGGTCTCAAAGGGTC 1273
BSNT_00581___ 1280 CGATTATTCAAGCCATACAGGAAAAGGGCT-------GCTCGTCAACGGA 1322
.||||.|..|||||||.||..||.|||||| ||| ||| |||
BPUM_1811___n 1274 AGATTGTGGAAGCCATTCAAAAAGAGGGCTTAACAACGCT--TCA--GGA 1319
BSNT_00581___ 1323 CGAGATCAAAGC-ATGCACTGGCGCATCCCGCTCATGCGGAGGCTGTAAG 1371
.| || |||| |||.||..|.||.||.||.|||||||||||||||||.
BPUM_1811___n 1320 AG---TC-AAGCAATGTACAAGTGCCTCACGATCATGCGGAGGCTGTAAA 1365
BSNT_00581___ 1372 CCACTCGTAGAAGAAATCCTCCAGCATACGCTCGGATCAGACTTTGATGC 1421
||..|.||.|||||.||.||...|||.|||||.|| |..||.|||
BPUM_1811___n 1366 CCCGTAGTTGAAGAGATTCTTTGGCACACGCTGGG------CGATGGTGC 1409
BSNT_00581___ 1422 G------TCAGCGCAAAAAGAAGCCATTTGCGGCTGCACCACATTGTCAA 1465
| .||||.|||||||||.|||||||||..||||||||..|.|||.
BPUM_1811___n 1410 GAACCGAACAGCTCAAAAAGAAACCATTTGCGCTTGCACCACTCTTTCAC 1459
BSNT_00581___ 1466 GAGATGAAGTCGTAGAAGAAATCAAAGCCA-AAGGGCTGTCA-CATA-CA 1512
|||||||||||.|..|.|||||||||| | |||||||..|| |||| ||
BPUM_1811___n 1460 GAGATGAAGTCATTCACGAAATCAAAG--AGAAGGGCTTGCAGCATATCA 1507
BSNT_00581___ 1513 AGAGAAGTCATGAATGTGCTCGGCTGGAAAACGCCAGAAGGCTGTTCCAA 1562
|| ||||||||||..||.||.|..|||.|.||...||||||||||||.||
BPUM_1811___n 1508 AG-GAAGTCATGAGCGTACTTGATTGGGAGACAGAAGAAGGCTGTTCAAA 1556
BSNT_00581___ 1563 ATGCCGGCCGGCTCTGAACTACTACTTAGGCATGATCAATCCAACC---- 1608
||||||.||.||.|||||||||||.||||||||| .|.|||||
BPUM_1811___n 1557 ATGCCGACCTGCCCTGAACTACTATTTAGGCATG----CTTCAACCTCTT 1602
BSNT_00581___ 1609 AAATACGAGGATGACCGGACATCCCGCTTTGTTAATGAACGAATGCACGC 1658
.|.|||.|.|||||..|.|..||..|.|.|||.||||||||..|.|||||
BPUM_1811___n 1603 GAGTACAAAGATGAAAGAAGCTCAAGATATGTAAATGAACGCTTACACGC 1652
BSNT_00581___ 1659 CAATATTCAAAAAGACGGAACATACTCAGTCGTTCCTCGGATGTACGGCG 1708
|||||||||||||||.||.||.||.||.||.|||||.||||||||.||.|
BPUM_1811___n 1653 CAATATTCAAAAAGATGGCACTTATTCGGTTGTTCCACGGATGTATGGTG 1702
BSNT_00581___ 1709 GCGTGACCAACTCCACA-GATTTGCGCAAGATCGCCGATGTCGTTGACAA 1757
||||.| |||.|.||.| ||.|||.|.||.||.||.||||||||.|||||
BPUM_1811___n 1703 GCGTCA-CAAATGCAAATGACTTGAGAAAAATAGCTGATGTCGTCGACAA 1751
BSNT_00581___ 1758 ATATGAGATCCCGCTCGTGAAAATGACAGGCGGCCAGCGAATTGATCTTA 1807
||||||.||.|||||.|||||||||||.||.||.|||||.|||||.|||.
BPUM_1811___n 1752 ATATGAAATACCGCTTGTGAAAATGACGGGTGGTCAGCGTATTGACCTTC 1801
BSNT_00581___ 1808 TCGGCGTGAAAAAAGAAGACCTTCCGAAGGTATGGGAAGATCTTGATATG 1857
|.||.||.|||||||||||..|.||.||.||||||||.||.||.||||||
BPUM_1811___n 1802 TAGGTGTCAAAAAAGAAGATTTACCTAAAGTATGGGAGGACCTGGATATG 1851
BSNT_00581___ 1858 CCGTCGGGCTACGCATACGGAAAAACGCTCCGCACAGTGAAAACATGTGT 1907
||.||.||.||.|||||.||||||.|..|..|.||.||.|||||.|||||
BPUM_1811___n 1852 CCTTCTGGTTATGCATATGGAAAATCTTTAAGAACGGTCAAAACGTGTGT 1901
BSNT_00581___ 1908 AGGCGAGCAATTCTGCCGCTTCGGCACACAAGACTCCATGGCACTGGGCA 1957
.|||||.|||||.|||||.|||||||||||.|||||.|||||.||.||.|
BPUM_1811___n 1902 TGGCGAACAATTTTGCCGGTTCGGCACACAGGACTCAATGGCGCTTGGTA 1951
BSNT_00581___ 1958 TTGCGCTTGAGAAAAAATTCGAAGGGCTAAACACGCCGCACAAAGTCAAA 2007
||||.|||||.||.|||||||||||.||....||.|||||.|||||||||
BPUM_1811___n 1952 TTGCACTTGAAAAGAAATTCGAAGGTCTTGCGACACCGCATAAAGTCAAA 2001
BSNT_00581___ 2008 ATGGCCGTGTCTGCATGCCCGCGAAACTGTGCGGAATCCGGCATTAAGGA 2057
.||||.||.|||||.|||||..||||||||||.|||||.|||||||||||
BPUM_1811___n 2002 TTGGCTGTCTCTGCTTGCCCTAGAAACTGTGCAGAATCTGGCATTAAGGA 2051
BSNT_00581___ 2058 CCTTGGCGTTGTCGGCATCGACGGAGGCTGGGAGCTTTATGTCGGCGGAA 2107
|||||||.||||.||.||.||.|||||.|..||..|.||.|..|||||.|
BPUM_1811___n 2052 CCTTGGCATTGTGGGGATAGAGGGAGGATTCGAATTGTACGCTGGCGGTA 2101
BSNT_00581___ 2108 ACGGCGGAACCCACTTGCGTGCCGGCGATTTGCTGATGAAGGTGAAAACA 2157
|.|||||.||.||..|||||||.||.|||||..||||||||||.|..|||
BPUM_1811___n 2102 ATGGCGGCACGCATCTGCGTGCTGGAGATTTATTGATGAAGGTCAGTACA 2151
BSNT_00581___ 2158 AATGAAGAAGTCTTAGAATACGCA---GGC----GCTTACCTGCAATATT 2200
..|||||||| |||| ||| ||| ||.|||||.|||||||
BPUM_1811___n 2152 GCTGAAGAAG---TAGA----GCAAGTGGCAGCTGCATACCTTCAATATT 2194
BSNT_00581___ 2201 ACAGGGAAACCGCAAACTATCTGGAGCGTACGTCCGCATGGCTTGAGCGC 2250
||||.|||||.|||||||||.|.||..|.||.||.||.|||.||||.||.
BPUM_1811___n 2195 ACAGAGAAACGGCAAACTATTTAGAAAGAACCTCTGCTTGGGTTGAACGA 2244
BSNT_00581___ 2251 GTCGGTTTATCCCATGTCCAATCCGTGT-----TAAACGATCCGGAAAAG 2295
.|.||.|||...|||.||||||| ||| ||.||||| |||||.
BPUM_1811___n 2245 CTTGGATTAGATCATATCCAATC--TGTACTTCTAGACGAT---GAAAAA 2289
BSNT_00581___ 2296 CGGCAGGAGC--TGAACGACCGAATGAATGAAACA-CTCTCTGTCCAC-- 2340
|| ||.||| |||.|.|..||||| .||| |.|.||.|||||
BPUM_1811___n 2290 CG--AGAAGCCTTGATCCAAAGAATG-----GACATCGCACTTTCCACGT 2332
BSNT_00581___ 2341 --AAGGATCCGTGGAAAGACTTTTTAGAGGATAAACAAACCTCGAAAGAA 2388
.|.||.||.|||.|.||..||...|||..|.||.||.|..|||||.||
BPUM_1811___n 2333 ATGATGAGCCTTGGCAGGAGCTTCGCGAGAGTCAAAAAGCGACGAAACAA 2382
BSNT_00581___ 2389 TTATTTGAAAA------------TGTCGTGACCACATCA--TAA 2418
||||||.|||| ||| |.|| |||| |.|
BPUM_1811___n 2383 TTATTTCAAAAAGCAACGGCTTCTGT----ATCA-ATCAATTGA 2421
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