Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03060 and BPUM_1824
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:35
# Commandline: needle
# -asequence dna-align/BSNT_03060.1.24716.seq
# -bsequence dna-align/BPUM_1824___proH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03060-BPUM_1824___proH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03060-BPUM_1824___proH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03060
# 2: BPUM_1824___proH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 855
# Identity: 327/855 (38.2%)
# Similarity: 327/855 (38.2%)
# Gaps: 435/855 (50.9%)
# Score: 980.0
#
#
#=======================================
BSNT_03060 0 -------------------------------------------------- 0
BPUM_1824___p 1 ATGGCGGAAGGAATGATTGCAGGGATTGTGCGATCAGGACAAATGCCGCC 50
BSNT_03060 0 -------------------------------------------------- 0
BPUM_1824___p 51 GGGCCAAATATACGCAACAAACAGACAAAATCAACTTCGATTGAATGAAC 100
BSNT_03060 0 -------------------------------------------------- 0
BPUM_1824___p 101 TAACGACACGTTACGGAATACAAACAGCCACAATGGATTCTTTTCCTTTT 150
BSNT_03060 0 -------------------------------------------------- 0
BPUM_1824___p 151 GAAGAAATGGATATGTTGATCCTAGCCATGAAGCCAAAGGATGCTGAAAC 200
BSNT_03060 0 -------------------------------------------------- 0
BPUM_1824___p 201 AGCACTTGAATCGTTAAAACCTCATATTCAGAGAGACCAGCTGATCTTGT 250
BSNT_03060 0 -------------------------------------------------- 0
BPUM_1824___p 251 CTGTCCTTGCAGGCGTGAAGCAATCCTATATTGAAGATATGCTGCATGAA 300
BSNT_03060 1 ---------------------------------------ATGATTGGCGC 11
|.|||.||.||
BPUM_1824___p 301 GGGCAGCCCGTGATGAGGGTCATGCCGAATACGTCAAGTACGATCGGGGC 350
BSNT_03060 12 TTCTGCAACAGCTAT-TGCCCTTGGCAAATATGTGTCGGAAGACC----- 55
|||.||.||.|||.| ||..||.||| ..||||||...||.||||
BPUM_1824___p 351 TTCAGCGACCGCTTTATGTGCTGGGC-GTTATGTGAAAGACGACCATATC 399
BSNT_03060 56 ----TGA---AGAAGCTGGCCGAAGCATTGCTCGGATGCATGGGCGAAGT 98
||| || ||| |.||..||.|| .|||||.|||||
BPUM_1824___p 400 AGCATGAGTCAG--GCT--------CTTTTATCTGA--AATGGGTGAAGT 437
BSNT_03060 99 CTATACAATCCAAGAAAATCAAATGGATATATTCACCGGAATTGCAGGCA 148
.|||||.||.||.|||.|.|||||||||||.||.||.||||||||.||.|
BPUM_1824___p 438 GTATACCATTCAGGAAGAACAAATGGATATTTTTACTGGAATTGCCGGAA 487
BSNT_03060 149 GCGGCCCCGCGTATTTTTATTATTTAACGGAATTCATTGAA-AAGACAGG 197
||||.||.||.||||||||||..||||.||||...||.||| ||| ||||
BPUM_1824___p 488 GCGGACCAGCCTATTTTTATTTCTTAATGGAAAGAATCGAAGAAG-CAGG 536
BSNT_03060 198 CGAGGAAGCGGGCCTCGATAAACAGTTATCTCG--AAGCATCGGCGCACA 245
.||.|||||.||..|...|||..|.||.||||| || ||.|||||.||
BPUM_1824___p 537 GGAAGAAGCAGGTTTATCTAAGGAATTGTCTCGCCAA--ATTGGCGCGCA 584
BSNT_03060 246 GACACTTTTAGGTGCCGCAAAAATGCT-CATGGAAACAGGAGAACATCCT 294
|||||||.|.|||||.||.|||||||| || .|||||||..|||.|.|||
BPUM_1824___p 585 GACACTTCTCGGTGCTGCGAAAATGCTGCA-AGAAACAGAGGAAGACCCT 633
BSNT_03060 295 GAGATC----TTAAGAGATAATATCACGTCACCTAACGGAACGACAGCAG 340
|| ||||||||.||.||.||||||||.||.|||||.||.||.|
BPUM_1824___p 634 ----TCTGCATTAAGAGAGAAAATTACGTCACCAAATGGAACAACTGCGG 679
BSNT_03060 341 CGGGGCTGCAAGCCTTGAAAAAAAG----CGGCGGCGGAGAAGCGATTTC 386
|.||.|||.|.||.|| |.|.| .|||||.||||||||.|
BPUM_1824___p 680 CAGGACTGAATGCATT----AGATGATTTTGGCGGAGGAGAAGCCA---- 721
BSNT_03060 387 TCAAGCGA-----TAAAGCATGCGGCTAAGCGTTCAAAGGAAATCAGCGA 431
|||||| | |.||.|||||.||.||.||.|||||.|||||||||.|
BPUM_1824___p 722 TCAAGC-AGGCCGTCAAACATGCTGCCAATCGATCAAAAGAAATCAGCAA 770
BSNT_03060 432 AGGTATC-GAAAAAAC--------TGCAGCGCCGCTATCAGGAGTGATAA 472
| | |.|||||| | |||| ||||
BPUM_1824___p 771 A-----CAGCAAAAACAAAAAGTAT---------CTAT--------ATAA 798
BSNT_03060 473 AGTGA 477
BPUM_1824___p 798 ----- 798
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