Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02904 and BPUM_1829

See Amino acid alignment / Visit BSNT_02904 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:28
# Commandline: needle
#    -asequence dna-align/BSNT_02904___xylA.1.24716.seq
#    -bsequence dna-align/BPUM_1829___xylA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02904___xylA-BPUM_1829___xylA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02904___xylA-BPUM_1829___xylA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02904___xylA
# 2: BPUM_1829___xylA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1357
# Identity:    1012/1357 (74.6%)
# Similarity:  1012/1357 (74.6%)
# Gaps:          38/1357 ( 2.8%)
# Score: 3642.0
# 
#
#=======================================

BSNT_02904___      1 ATGGCTCAATCTCATTCCAGT-TCAA----TTA-ACTATTTT----GGAA     40
                     ||||||  |.||||    |.| |.||    ||| || |..||    ||||
BPUM_1829___x      1 ATGGCT--AACTCA----AATATGAAAACGTTACAC-AGCTTAGAAGGAA     43

BSNT_02904___     41 GCGCAA----ACAAAGTGGTTTACGAAGGGAAAGATTCGACTAATCCTTT     86
                     .||.||    ||||     |||  |||||.|||.|.||.|..|||||..|
BPUM_1829___x     44 TCGGAAAAATACAA-----TTT--GAAGGAAAACAATCAAAAAATCCACT     86

BSNT_02904___     87 AGCATTTAAATATTATAATCCTCAA--GAAGTAATCGGCGGAAAAACGAT    134
                     .||.|||||||..|||||||  |||  ||||||||.|||||||||||.||
BPUM_1829___x     87 CGCTTTTAAATCCTATAATC--CAAGTGAAGTAATTGGCGGAAAAACAAT    134

BSNT_02904___    135 GAAAGAGCATTTGCGATTTTCTATTGCCTATTGGCATACATTTACTGCTG    184
                     ||||||.||..||||.||.||..|.||.||||||||||||||.|||||||
BPUM_1829___x    135 GAAAGATCACCTGCGCTTCTCAGTCGCTTATTGGCATACATTGACTGCTG    184

BSNT_02904___    185 ATGGTACGGACGTTTTTGGATCAGCTACGATGCAAAGACCATGGGA-TCA    233
                     ||||.||.|||.|.||||||.|.|..||||||||.|||.||||||| || 
BPUM_1829___x    185 ATGGAACAGACATGTTTGGAACTGGCACGATGCAGAGAGCATGGGACTC-    233

BSNT_02904___    234 CTATAAAGGCATGGATCTAGC-GAAGATGAGAGTAGAAGCAGCATTTGAG    282
                     |||.|..||.||||||.|||| .|||.| |||.|.||||..||.|||.|.
BPUM_1829___x    234 CTACAGCGGGATGGATTTAGCAAAAGCT-AGATTGGAAGTTGCCTTTCAA    282

BSNT_02904___    283 ATGTTTGAAATACTAGATGCACCATTCTTTGCTTTTCATGACCGGGATAT    332
                     .|||||||..||.||||||..||.|..|||.|.||.||||||||.||.||
BPUM_1829___x    283 CTGTTTGATCTATTAGATGTCCCGTATTTTTCCTTCCATGACCGTGACAT    332

BSNT_02904___    333 TGCACCAGAAGGCAG-TACGCTAAAAGAGACAAACCAAAATTTAGATATG    381
                     |||||| |.|||.|| ||||||..|||||||.||.|||.|||||||.||.
BPUM_1829___x    333 TGCACC-GGAGGGAGATACGCTTCAAGAGACGAATCAACATTTAGACATC    381

BSNT_02904___    382 ATCGTGGGCATGATTAAAGATTACATGAGAAATAGCGGCGTTAAGCTATT    431
                     ||..|.|..|..||.|||||.||||||.|..|||||||.||.||||||.|
BPUM_1829___x    382 ATTTTAGAAAGAATGAAAGAATACATGCGGGATAGCGGAGTCAAGCTACT    431

BSNT_02904___    432 ATGGAATACCGCAAACATGTTTACGAATCCCCGTTTCGTCCATGGTGCCG    481
                     .|||||.||.||.||||||||.|.|.||||..|.||.||.||.||.||.|
BPUM_1829___x    432 GTGGAACACGGCCAACATGTTCAAGCATCCTAGATTTGTTCACGGCGCAG    481

BSNT_02904___    482 CGACTTCTTGCAATGCAGATGTGTTTGCGTATGCTGCAGCACAAGTGAAA    531
                     ||||.|||||..||||||||||.|||||.|||||.||.|||||.||||||
BPUM_1829___x    482 CGACATCTTGTCATGCAGATGTCTTTGCCTATGCAGCCGCACAGGTGAAA    531

BSNT_02904___    532 AAAGGGTTAGAAACAGCAAAAGAGCTTGGCGCTGAGAACTATGTATTTTG    581
                     |||||..|.||||||||.|||||.|||.||||.||.||.||.||.||.||
BPUM_1829___x    532 AAAGGCATCGAAACAGCTAAAGAACTTCGCGCAGAAAATTACGTTTTCTG    581

BSNT_02904___    582 GGGCGGCCGTGAAGGATATGAAACATTGTTAAATACCGATTTAAAATTTG    631
                     |||.||.||.||.|||||.||.||..||.|.|||||.|||.|.|||...|
BPUM_1829___x    582 GGGAGGACGAGAGGGATACGATACTCTGCTGAATACTGATATGAAAAGAG    631

BSNT_02904___    632 AGCTTGATAATTTGGCTAGATTTATGCATATGGCAGTGGATTATGCGAAG    681
                     ||||.||..|..||||...|||..||||||||||.||.||||||||.|||
BPUM_1829___x    632 AGCTAGACCACATGGCGTCATTCTTGCATATGGCTGTTGATTATGCAAAG    681

BSNT_02904___    682 GAAATCGGGTACACAGGGCAGTTTTTGATTGAGCCAAAACCAAAAGAGCC    731
                     |||||.||.|||||.||.||.|||||.||||||||.||.||.||.|||||
BPUM_1829___x    682 GAAATTGGATACACTGGCCAATTTTTAATTGAGCCTAAGCCGAAGGAGCC    731

BSNT_02904___    732 GACCACCCATCAATACGATACAGATGCAGCAACAACCATTGCCTTTTTGA    781
                     |||.||.||||||||||||.||||||||||.|||.|.||.||||||||.|
BPUM_1829___x    732 GACTACTCATCAATACGATGCAGATGCAGCGACATCTATCGCCTTTTTAA    781

BSNT_02904___    782 AGCAATATGGCTTAGACAATCATTTTAAATTAAATCTTGAAGCCAATCAT    831
                     |||||||.||.|||||.|..|||||||||||.||..||||.||.||||||
BPUM_1829___x    782 AGCAATACGGATTAGATACACATTTTAAATTGAACATTGAGGCGAATCAT    831

BSNT_02904___    832 GCCACATTAGCCGGGCATACATTCGAACATGAATTACGCATGGCAAGAGT    881
                     ||.||..|.||.||.|||||.||.||.|||||||||||..|.||.|||.|
BPUM_1829___x    832 GCGACGCTTGCTGGCCATACGTTTGAGCATGAATTACGTGTCGCGAGAAT    881

BSNT_02904___    882 ACATGGTCTGCTTGGCTCTGTTGACGCAAACCAGGGTCATCCTCTTTTAG    931
                     ||||||..||||.||.|||||.||.||.|||||.||..||.|.||..|.|
BPUM_1829___x    882 ACATGGATTGCTCGGTTCTGTGGATGCGAACCAAGGGAATACGCTACTTG    931

BSNT_02904___    932 GCTGGGACACGGATGAATTTCCGACGGATTTATATTCTACGACATTAGCA    981
                     |.||||||||.|||||||||||.||.|||||||||.|.||.||..|.||.
BPUM_1829___x    932 GATGGGACACTGATGAATTTCCAACCGATTTATATGCCACAACGCTTGCC    981

BSNT_02904___    982 ATGTACGAAATCCTGCAAAATGGCGGCCTAGGAAGCGGCGGATTAAACTT   1031
                     |||||.|||||.||||||||||||||.|||||.|..||.||..|.|||||
BPUM_1829___x    982 ATGTATGAAATTCTGCAAAATGGCGGACTAGGTACTGGTGGTCTCAACTT   1031

BSNT_02904___   1032 TGATGCGAAGGTCAGAAGATCTTCTTTTGAGCCTGATGATCTAATATATG   1081
                     ||||||.||.||.||||||.||||||||||||.|||.|||.|..|.||||
BPUM_1829___x   1032 TGATGCAAAAGTTAGAAGAGCTTCTTTTGAGCTTGAAGATATTTTGTATG   1081

BSNT_02904___   1082 CCCATATTGCAGGGATGGATGCATTTGCAAGAGGATTGAAAGTTGCCCAC   1131
                     ||||||||||.||||||||||||||.||||.||||||||..||.||.||.
BPUM_1829___x   1082 CCCATATTGCGGGGATGGATGCATTCGCAAAAGGATTGAGGGTCGCTCAT   1131

BSNT_02904___   1132 AAATTAATCGAAGATCGTGTGTTTGAAGATGTGATTCAACATCGTTACCG   1181
                     |.|.|.||.|||||||||||||||||||||||.|||.|.||.||.||.||
BPUM_1829___x   1132 AGACTCATAGAAGATCGTGTGTTTGAAGATGTCATTAAGCACCGGTATCG   1181

BSNT_02904___   1182 CAGCTTTACTGAAGGGATTGGTCTTGAAATTATAGAAGGAAGAGCTAATT   1231
                     |||.|||.|||||||||||||.|.|||.|||..||||||||..||.||.|
BPUM_1829___x   1182 CAGTTTTTCTGAAGGGATTGGCCGTGATATTTCAGAAGGAAAGGCAAACT   1231

BSNT_02904___   1232 TTCACACACTTGAGCAATATGCGCTAAATCATAAATTAATTAAAAACGAA   1281
                     ||||.|.|.|.||..|.|||||..|.||.|||...|||||.|.|||||||
BPUM_1829___x   1232 TTCATATATTAGAAGAGTATGCATTGAAACATCCTTTAATCAGAAACGAA   1281

BSNT_02904___   1282 TCTGGAAGACAGGAGAAATTAAAAGCGATATTGAACCAATACATTTTAGA   1331
                     ||.||||||.||||..|.||.|||||....||.||.||||||.|.|||||
BPUM_1829___x   1282 TCGGGAAGAGAGGAACAGTTGAAAGCCCGGTTAAATCAATACTTGTTAGA   1331

BSNT_02904___   1332 AGTATAA   1338
                     ||..|.|
BPUM_1829___x   1332 AGATTGA   1338


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.