Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02943 and BPUM_1837
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_02943___yndG.1.24716.seq
# -bsequence dna-align/BPUM_1837.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02943___yndG-BPUM_1837.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02943___yndG-BPUM_1837.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02943___yndG
# 2: BPUM_1837
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 998
# Identity: 508/998 (50.9%)
# Similarity: 508/998 (50.9%)
# Gaps: 307/998 (30.8%)
# Score: 1022.0
#
#
#=======================================
BSNT_02943___ 1 GTGAGGCAGAAA-CCGATTTATGTAGAAA-------TCGAAATGAAATCT 42
.||| ..||||| ||..|||||||.|||| || |||.| |.
BPUM_1837 1 ATGA-AAAGAAAGCCTGTTTATGTGGAAACAACCATTC---ATGCA--CC 44
BSNT_02943___ 43 GATCTGGATACACTCTGGGAATATACACAAAACCCATCACTGCATAAGGA 92
|| |.||.|.|.|.||||||.||||.|||||.|||...||.|||.|..|
BPUM_1837 45 GA--TAGAGAAAGTATGGGAACATACGCAAAATCCAAAGCTTCATGAACA 92
BSNT_02943___ 93 ATGGGATCTCCGGTTTTCAAATATTACGTATT---TGAATAGTCAGCCAT 139
|||||||.|.||.|||||||..|||.| ||| |||| |..|.|.
BPUM_1837 93 ATGGGATTTGCGTTTTTCAACCATTTC--ATTAAATGAA----CCTCAAA 136
BSNT_02943___ 140 GCGAAAAA---CAGAAGTTTCTTTACGAAACAAG--GGTAGGCTTTGGAT 184
.||||.|| ||....|||.|.||.||| ||| ..|.||.|||||.|
BPUM_1837 137 ACGAACAACCCCAATCCTTTTTGTATGAA--AAGCATCTTGGGTTTGGTT 184
BSNT_02943___ 185 TAAAGGTGT--CAGGTACAGGAGAAACCGTCCGTGTTTTC-AACA--AAT 229
||| |||| ||||.||||||| .||.|| |||| |||
BPUM_1837 185 TAA--GTGTCACAGGGACAGGAG-----------CTTATCGAACAAGAAT 221
BSNT_02943___ 230 G-TTCAT-------CTGAAAGGTCTTCTTCACTGGCTTTTGGCTCTGAT- 270
| |..|| .|||..||.|.||.|||||...|| ||..||
BPUM_1837 222 GATGGATGAACGGAATGAGCGGGCATCCTCACTAAATT-----TCAAATC 266
BSNT_02943___ 271 ----CATCCATTATCTCTGATTCGGC----ATGGAAGCGGCTACTGGAAG 312
||.|||||.|||.|.|| | |.||.|||||.|||||||||
BPUM_1837 267 GTCACACCCATTGTCTTTTAT----CAAAGAAGGCAGCGGTTACTGGAAG 312
BSNT_02943___ 313 TATATACAGAGAGAAAATGGGA--AAATGACGTTTTTAACACAGTACCAA 360
|||||| |.||.|.|.|| |.||...||||..|||.||.|...|.
BPUM_1837 313 TATATA-----AAAACAAGCGACCACATTGTGTTTCAAACGCAATTTGAT 357
BSNT_02943___ 361 TACAAAACAGCCTACGGACTGCTGGGAA--GATGGA-TTGATC------G 401
|||||||| ||..|..||.|| |||||| .||..| |
BPUM_1837 358 TACAAAAC--------GAAAGAAGGAAAAGGATGGACATGGGCAGACAAG 399
BSNT_02943___ 402 TTTATTATTTCGGCCGCTGCTTGGCTGGGCGACTGCCTGGAGCTTTGATG 451
.||.|| |||||.||..||.||||.|....|||.||||..||.||||.||
BPUM_1837 400 ATTCTT-TTTCGCCCAATGATTGGATTTATGACAGCCTTTAGTTTTGGTG 448
BSNT_02943___ 452 CATTAAGGCTTTGGGTAGAGCAAAATAAA--CATCC-------------- 485
||||||.|...|||.|.|| |||...|| |||||
BPUM_1837 449 CATTAAAGACGTGGCTTGA--AAAGGGAACGCATCCCCGGTTATTACTAG 496
BSNT_02943___ 486 ---GAAGCGCT---TCATT--------------CGATCTGCTATCAT--- 512
||| |.|| ||||| |..|.|||.|||.|
BPUM_1837 497 AGAGAA-CACTTGCTCATTACGGGATTTGTTTGCTGTTTGCCATCGTCTG 545
BSNT_02943___ 513 -CTATG----------------TGTTCATGTGTCTGTTTTT-----CAGC 540
||||| |.||||..| ||.|.|||| .|||
BPUM_1837 546 GCTATGCCAAGCGATCATTCCTTTTTCACAT-TCGGCTTTTGATCATAGC 594
BSNT_02943___ 541 CTG---TTTTGGTTCTATCAAG-GCTTTGCAGGTGTTGAAACAAGCATTT 586
.|| |||.|.||.|.|.|.| ||||| .|||.|| ||||
BPUM_1837 595 ATGAGTTTTCGATTGTTTTATGCGCTTT-TAGGCGT-------AGCA--- 633
BSNT_02943___ 587 TGGC--AGG----AAC-AGCGGAGATAGGCTTAGCT----ATTT------ 619
|||| |.| ||| |.|..|||.| ||.|| ||||
BPUM_1837 634 TGGCTAATGCCCAAACTATCAAAGAAA----TATCTCTTCATTTTACAAA 679
BSNT_02943___ 620 ---TGTGGCTGCT-----TCCTTTAAAAAGAAAATGGATC---------- 651
|||..||.|| |.||||..|.||.||.|..|||
BPUM_1837 680 GTATGTTTCTTCTCATGATGCTTTGTATAGGAATTCTATCTCCGCAAACG 729
BSNT_02943___ 652 ---ATTCATGGTGTCCAGGCTTGT---------ATTTTTGCTGGGTTT-- 687
.|||||| ..|| |||||| |||||||.| |||
BPUM_1837 730 ACGCTTCATG--AACC--GCTTGTGATGAGTGCATTTTTGAT---TTTGT 772
BSNT_02943___ 688 -GCTTGTCTAGGTTCCGAAATATTCATGT----GGATTCTGTTGAGTGTG 732
|.||| .|||| ||.||||..| .||||.|||.|| |||.
BPUM_1837 773 CGATTG--CAGGT------ATGTTCAATTTAAAAGATTGTGTAGA-TGTA 813
BSNT_02943___ 733 TTTTCCGCTGCAAGC---------------------GGCGCTCTTAGCCT 761
||||| |..|||.| |.||.||.|.|.|.
BPUM_1837 814 TTTTC--CATCAAACGAAAAAGGGGAGGTAGACATGGTCGTTCATCGTCA 861
BSNT_02943___ 762 GCAGCTCCCCAGTGCCAGGCGCACAAAACGA--AAGAGAAAGAAGTGA 807
.|| ||| |||.|| |.||.||
BPUM_1837 862 TCA-------AGT------------AAAGGATTACGATAA-------- 882
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