Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03121 and BPUM_1850

See Amino acid alignment / Visit BSNT_03121 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence dna-align/BSNT_03121___yocC.1.24716.seq
#    -bsequence dna-align/BPUM_1850___yocC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03121___yocC-BPUM_1850___yocC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03121___yocC-BPUM_1850___yocC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03121___yocC
# 2: BPUM_1850___yocC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 609
# Identity:     355/609 (58.3%)
# Similarity:   355/609 (58.3%)
# Gaps:         135/609 (22.2%)
# Score: 1080.5
# 
#
#=======================================

BSNT_03121___      0 --------------------------------------------------      0
                                                                       
BPUM_1850___y      1 TTGAAAGATCCATCCACTTCCTTTAAAATTGGAATTTATGTGATTTTTAT     50

BSNT_03121___      1 ----------------------------TTGTTTACTATTAAAGAAAA--     20
                                                 ||| |.|.|.|||.||.|||  
BPUM_1850___y     51 CATTTCTGATAGGAAAGGAGTAATGGACTTG-TCAATCTTACAGGAAACA     99

BSNT_03121___     21 ------------AAATCGTCAAGAGCTTGAAGAAGAACTAAATGATTTAG     58
                                 ||.|||| .|||||      ||||..||.|..|.||..
BPUM_1850___y    100 GCCAAAGATGTGAAGTCGT-TAGAGC------AAGATTTACAGCAATTGC    142

BSNT_03121___     59 AATTTCAAATTTATCGCATGCAGGAGAATATGAAGGATTTGTCTAAAGAT    108
                     |.||.|||||.|||||.|||||.||.||.|||||.|||.|.||.|||.|.
BPUM_1850___y    143 AGTTCCAAATGTATCGAATGCAAGAAAACATGAAAGATATTTCGAAAAAA    192

BSNT_03121___    109 GCCAAAGTGCTTGGTATTGATCAATCGAAACATGATGAGTGGATGATTGT    158
                     ||.|||.|..||||.||.||||||.|||||.|.|||||||||.||||.||
BPUM_1850___y    193 GCAAAAATCATTGGCATCGATCAAGCGAAAGAAGATGAGTGGCTGATCGT    242

BSNT_03121___    159 TTCCTCGATTGATGATGGCCAAACATGCAAAATTATGCTAACTGATTGTA    208
                     .||..|.|||||..|||...|.|||||.|||||||||||.|..||||||.
BPUM_1850___y    243 CTCTGCCATTGAAAATGCAGATACATGTAAAATTATGCTCAGCGATTGTG    292

BSNT_03121___    209 AAACGGCTTACCGAGGAAAAGGCTG-TTTTTCACTT-GTAGCG-----TC    251
                     |||..||||..||.|||.|| .||| |||||| ||| .|.|||     ||
BPUM_1850___y    293 AAAAAGCTTTTCGCGGACAA-TCTGATTTTTC-CTTAATTGCGGAATATC    340

BSNT_03121___    252 TT--ACAAGGACGATGCCATTCATATAGGGGATATAAAAGGCCCTCCGAA    299
                     .|  |.|||||  |.|  ||||||||.|..|||||.||||||||.||..|
BPUM_1850___y    341 CTGAAGAAGGA--AAG--ATTCATATTGCCGATATTAAAGGCCCGCCAGA    386

BSNT_03121___    300 TCACGGGTTTGGTTCCATTTGCATGAAATATTTAAAAGATATAGCAAGAG    349
                     |.|.||||..||.|||||.||||||||..||||||||||.||.||.||||
BPUM_1850___y    387 TAATGGGTACGGCTCCATCTGCATGAAGCATTTAAAAGAAATCGCTAGAG    436

BSNT_03121___    350 ACCACAATATACCGAAAG---TCACCGGAGACATCGCCAAACGGGATTGG    396
                     |.||.||.||.||   ||   |.||.||.|||.|||.||||.|.||.|||
BPUM_1850___y    437 AGCAGAACATCCC---AGTGATTACTGGTGACCTCGTCAAAAGAGACTGG    483

BSNT_03121___    397 AATCATGTAGACCGGCTGATTCACTTTTATGAAAAACATCAATTCAAAGT    446
                     .||||.||.|||||..|||||||.|||||||||||.||||||||     |
BPUM_1850___y    484 GATCACGTGGACCGCTTGATTCATTTTTATGAAAAGCATCAATT-----T    528

BSNT_03121___    447 -ATGTATCGATCA--TG---ATACCCAATCCGGCAG-CATTAAGTGGGTT    489
                      ||||...|||||  ||   |.|.|.||.|  |.|| .|||.|.|||||.
BPUM_1850___y    529 GATGTCCAGATCAATTGGAAAGAACAAAGC--GGAGAAATTTATTGGGTG    576

BSNT_03121___    490 GATTTGTAA    498
                     ||....|||
BPUM_1850___y    577 GACAGCTAA    585


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