Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03135 and BPUM_1853
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_03135.1.24716.seq
# -bsequence dna-align/BPUM_1853___yocK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03135-BPUM_1853___yocK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03135-BPUM_1853___yocK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03135
# 2: BPUM_1853___yocK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 557
# Identity: 263/557 (47.2%)
# Similarity: 263/557 (47.2%)
# Gaps: 214/557 (38.4%)
# Score: 621.0
#
#
#=======================================
BSNT_03135 1 ATGGCACTGACAAAAGAACAAACACAGCATCTCTATCATAAATTGCTCGA 50
BPUM_1853___y 0 -------------------------------------------------- 0
BSNT_03135 51 TATGCAAAAAGAATTGTCTGGCGAGAAAAAGGAAACAGAATCAATGACGG 100
||||.||..|||| |||
BPUM_1853___y 1 -ATGCTAAGTGAAT-------CGA-------------------------- 16
BSNT_03135 101 AAGAAGTGGGGGAGCTTTCCAATGGGGTTGACAACCATATGGCAGACCAC 150
|.|||.||||.|||||.||.|..||||||||.||.||.||
BPUM_1853___y 17 ---------GCGAGATTTCAAATGGTGTAGGGAACCATATCGCTGATCA- 56
BSNT_03135 151 GGGACGC-TCGTCACAGACCGGATGACAGACCAAACAGTGAGA--GAGAT 197
.|||.|| ||.....||||||.|||||.||.|||||..|| || .||.|
BPUM_1853___y 57 TGGAAGCATCTATTTAGACCGCATGACCGAACAAACGCTG-GACCAAGTT 105
BSNT_03135 198 --TGACCGGGAGCTGTTAGAGGAGGTCAA-CCG-------TGCATTAC-- 235
||||| |||| |.|| ||| ||||..||
BPUM_1853___y 106 GATGACC---AGCT-----------TGAAGCCGAAATTGATGCAGCACTG 141
BSNT_03135 236 AAAAG-ATGAAAGACGGAACTTACGGCGTGTGTGAAAAAACCGGCCAAGA 284
|||.| |||.||||||||||.||.||..|.|||||.|||||.||..||||
BPUM_1853___y 142 AAACGAATGGAAGACGGAACATATGGGATTTGTGAGAAAACAGGGAAAGA 191
BSNT_03135 285 GATTCCTTACGAAAGACTTGAAGCTGTTCCTTATGCAAG--AATGACAGT 332
||||||.||.|||.|..|..||||.|||||.|||.||.| |.| ||.|
BPUM_1853___y 192 GATTCCCTATGAACGTTTAAAAGCAGTTCCCTATACACGCTATT--CAAT 239
BSNT_03135 333 TGAGGCCCAAGCTGATGTGGAGGATGATCTGGAGA---CAGATGCTCCTT 379
|||.|| ||.||..|.| |.||| || |||
BPUM_1853___y 240 TGATGC-------------GAAGAAAAAC-GAAGAAACCA----CTC--- 268
BSNT_03135 380 CTTATGAAAGA-------GAGTTTCA------------TGAACAGGTAAA 410
|||| ||||||.| ||| |.||
BPUM_1853___y 269 -------AAGATCCAAATGAGTTTGACCGTAATTTCTCTGA-----TCAA 306
BSNT_03135 411 A-----GACTTATCCAACAAAGAAACAATTGATCAAAAAAGC--TCGCAG 453
| ||.|||.|.||.|.|.|||||||.|||| |.|.|| ||..|.
BPUM_1853___y 307 ATGCGTGATTTAACAAATAGACAAACAATGGATC--AGATGCATTCAGAT 354
BSNT_03135 454 ACGTATGAAATCTT------------GGATCGTGAACA-AGATTCGAAG- 489
|||||||||...|| |||| ||..||| |||| ||.|
BPUM_1853___y 355 ACGTATGAACGATTAGAGGAAGAGCAGGAT-GTTGACATAGAT--GATGA 401
BSNT_03135 490 TAA---- 492
|||
BPUM_1853___y 402 TAAATAG 408
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