Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03146 and BPUM_1857

See Amino acid alignment / Visit BSNT_03146 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:38
# Commandline: needle
#    -asequence dna-align/BSNT_03146___dhaS.1.24716.seq
#    -bsequence dna-align/BPUM_1857___dhaS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03146___dhaS-BPUM_1857___dhaS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03146___dhaS-BPUM_1857___dhaS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03146___dhaS
# 2: BPUM_1857___dhaS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1551
# Identity:    1092/1551 (70.4%)
# Similarity:  1092/1551 (70.4%)
# Gaps:         129/1551 ( 8.3%)
# Score: 3809.5
# 
#
#=======================================

BSNT_03146___      1 ATGAGTTCTTTAACGATGCAAGTGA---CGAAAAGGCTGGAGACATTTTT     47
                     |||||.|||..|||..|.|||.|.|   |.|||   ||.||..|.|||.|
BPUM_1857___d      1 ATGAGCTCTACAACACTTCAAATTAGTTCAAAA---CTCGAATCTTTTCT     47

BSNT_03146___     48 ACAGGGAACAAAGAAGCTTTATATTGACGGTAAGTTTGTTCCGAGTGCCT     97
                     .||.||.||.||.||.||.||.|||.|.||..|||||||..|.||    |
BPUM_1857___d     48 CCAAGGGACGAAAAAACTCTACATTAATGGCCAGTTTGTCACAAG----T     93

BSNT_03146___     98 CAGGGGC--------AACCTTTGACACTCCAAACCCGGCGACCGGCGAAA    139
                     ||    |        |||||||...|||||.|||||.||.||.||.||||
BPUM_1857___d     94 CA----CGATAACAAAACCTTTTCAACTCCTAACCCAGCCACAGGTGAAA    139

BSNT_03146___    140 CC----TTGATGACGCTGTATGAAGCCCAGGCTGC---GGATGTGGACAA    182
                     ||    ||||||    |.|||||||  |||| |||   .||..|.||..|
BPUM_1857___d    140 CCCTTATTGATG----TATATGAAG--CAGG-TGCAAAAGACATTGATGA    182

BSNT_03146___    183 AGCGGTTAAAGCTGCCCGGAAAGCCTTTGACCAAGGTGAATGGAGAACAA    232
                     .||.||.|||||.|||...|||||||||   ||.|||...|||.|..|.|
BPUM_1857___d    183 GGCAGTAAAAGCAGCCAAAAAAGCCTTT---CATGGTCCTTGGCGCTCCA    229

BSNT_03146___    233 TGTCT-------------CCAGCTTCGAGAAGCAGACTGATGTATAAGCT    269
                     |||||             ||.|||||             ||||.||||||
BPUM_1857___d    230 TGTCTGCCGCCGAACGCGCCCGCTTC-------------ATGTTTAAGCT    266

BSNT_03146___    270 GGCGGACTTAATGGAAGAGCATAAAAC-----TGAGCTTGCTCAGCTTGA    314
                     .||.||.||||||||||     |||||     .|||||.||.||||||||
BPUM_1857___d    267 TGCTGATTTAATGGAAG-----AAAACCAAGAAGAGCTCGCGCAGCTTGA    311

BSNT_03146___    315 AACACTTGATAATGGGAAACCGATCAATGAAACGACTAATGGAGATATTC    364
                     |||.||.|||||.|||||.||.||.||||||||.||.||||.||||||.|
BPUM_1857___d    312 AACTCTAGATAACGGGAAGCCAATTAATGAAACAACCAATGCAGATATCC    361

BSNT_03146___    365 CGCTGGCTATTGAGCATATGCGCTATTACGCCGGCTGGTGTACAAAAATA    414
                     |.||.||.||.|||||||||||||||||.||.||||||...||.||||||
BPUM_1857___d    362 CTCTCGCAATCGAGCATATGCGCTATTATGCGGGCTGGACAACCAAAATA    411

BSNT_03146___    415 ACAGGACAGACGATTCCGGTTTCCGGC---GCTTATTTTAATTATACGCG    461
                     |..|||||.||.|||||.||   |.||   |..||.|||||.|||||.||
BPUM_1857___d    412 AGCGGACAAACCATTCCTGT---CAGCAAAGGATACTTTAACTATACCCG    458

BSNT_03146___    462 TCATGAGCCTGTCGGTGTCGTCGGCCAGATCATTCCATGGAATTTCCCGC    511
                     ||||||.|||||.||.||.||.||.||.||||||||.|||||.|||||||
BPUM_1857___d    459 TCATGAACCTGTTGGCGTTGTAGGACAAATCATTCCTTGGAACTTCCCGC    508

BSNT_03146___    512 TCCTGATGGCGATGTGGAAAATGGGCGCGGCACTTGCAACAGGCTGTACA    561
                     |.||.|||||.||||||||||||||.|||||||||||.||.|||||.||.
BPUM_1857___d    509 TACTTATGGCCATGTGGAAAATGGGTGCGGCACTTGCGACTGGCTGCACC    558

BSNT_03146___    562 ATCGTCCTCAAACCGGCTGAACAAACACCGCTTTCAGCTCTTTATTTGGC    611
                     |||||..|.|||||.||.|||||||||||.||.||.||.||.|||||.||
BPUM_1857___d    559 ATCGTGTTAAAACCAGCAGAACAAACACCCCTCTCTGCGCTCTATTTAGC    608

BSNT_03146___    612 AGAATTAATTGACCAAGCCGGTTTCCCTGCCGGTGTAATCAACATCATCC    661
                     .||||||.|.||..|||||||.|||||.|..|||||.||.||||||.|.|
BPUM_1857___d    609 TGAATTAGTAGATAAAGCCGGCTTCCCAGAAGGTGTGATTAACATCGTTC    658

BSNT_03146___    662 CGGGATTCGGTGAAGATGCGGGAGAAGCGCT------GACGAACCACGAA    705
                     |.|||||.||||||...||.|| ||| ||||      ||..|.||     
BPUM_1857___d    659 CTGGATTTGGTGAAACAGCTGG-GAA-CGCTTTAACCGATCACCC-----    701

BSNT_03146___    706 GCGGTTGAT------AAAATTGCCTTTACCGGTTCCACTGAAA---TCGG    746
                          ||||      ||.||||||||.||.||.||.||   ||   |.||
BPUM_1857___d    702 -----TGATGTAAACAAGATTGCCTTCACGGGGTCAAC---AAGTGTTGG    743

BSNT_03146___    747 AAAGAAA---ATCATGTCCACCGCAGCGAAAAGCATTAAGCGTGTTACAT    793
                        ||||   ||.|||...|..||.||.|||..|||||||.|.||.||||
BPUM_1857___d    744 ---GAAACTCATTATGGAGAAAGCTGCCAAATCCATTAAGAGAGTCACAT    790

BSNT_03146___    794 TGGAGCTGGGCGGAAAATCACCTAATATTCTTCTGCCGGATGCGAATTTG    843
                     |.||.||.||||||||||||||.||.|||.||.||||.|||||..||||.
BPUM_1857___d    791 TAGAACTTGGCGGAAAATCACCAAACATTATTTTGCCAGATGCCGATTTA    840

BSNT_03146___    844 AAAAAAGCCATCCCGGGCGCTTTAAACGGTGTGATGTTTAACCAGGGCCA    893
                     ||.||||||||.||.||.||||||||.||.||.|||||||||||.||.||
BPUM_1857___d    841 AAGAAAGCCATTCCTGGTGCTTTAAATGGGGTTATGTTTAACCAAGGTCA    890

BSNT_03146___    894 AGTCTGCTGTGCGGGCTCACGTGTCTTCATTCATAAAGAC------CAAT    937
                     |||.||||||||.||.||..|.|||||..|||      ||      ||||
BPUM_1857___d    891 AGTATGCTGTGCAGGTTCTAGGGTCTTTGTTC------ACCGGAGTCAAT    934

BSNT_03146___    938 ATGATGAAGTTGTTGATGAAATGGCGTCCTATGCTGAGTCACTCCGCCAA    987
                     |||||||.|||||||||.|||||||....|||||....||.|||...|||
BPUM_1857___d    935 ATGATGAGGTTGTTGATCAAATGGCTGAATATGCAACATCCCTCAAACAA    984

BSNT_03146___    988 GGAGCGGGACTTCATAAAGATACTCAAATCGGGCCTCTCGTAAGCAAGGA   1037
                     |||||.||.||||||.|||||||.||||||||||||||.||.||.||.||
BPUM_1857___d    985 GGAGCCGGTCTTCATCAAGATACACAAATCGGGCCTCTTGTCAGTAAAGA   1034

BSNT_03146___   1038 ACAGCATGAGCGCGTTCTTTCCTATATTCAAAAAGGAAAAGATGAAGGAG   1087
                     |||||||||||||||..|...|||||||.|||||||.|||...|||||.|
BPUM_1857___d   1035 ACAGCATGAGCGCGTGTTAGGCTATATTGAAAAAGGTAAATCAGAAGGTG   1084

BSNT_03146___   1088 CAAAAGCAGTGACCGGCGGAAGCTGTCCTTTTGAAGCAGGATATTTTGTC   1137
                     |||.|||.||...|||.||....||.||||.|||.||.||.|||||||||
BPUM_1857___d   1085 CAACAGCTGTTGTCGGTGGCGATTGCCCTTATGAGGCTGGTTATTTTGTC   1134

BSNT_03146___   1138 GCACCGACTGTGTTTGCGAATGTTGAAGACGAAATGACCATCGCAAAAGA   1187
                     .|.||.|||||.|||....||||.|||||.||.|||||||||||||||||
BPUM_1857___d   1135 TCCCCTACTGTTTTTAAAGATGTAGAAGATGATATGACCATCGCAAAAGA   1184

BSNT_03146___   1188 AGAAATTTTCGGACCCGTGCTGACTGCAATTCCGTACGAAACAGTCGATG   1237
                     ||||||.||.|||||.||.||..||||.|||||.|||||..|..|.||.|
BPUM_1857___d   1185 AGAAATCTTTGGACCTGTCCTATCTGCGATTCCTTACGATTCCATTGAAG   1234

BSNT_03146___   1238 AAGTTATTGAACGGGCAAACCATTCAGAATATGGGCTTGCAGCCGGACTA   1287
                     ||||..|.|||.|.||.|||||.||.||.|||||..|.||.||.|||||.
BPUM_1857___d   1235 AAGTGGTCGAAAGAGCCAACCAGTCTGACTATGGATTAGCCGCAGGACTT   1284

BSNT_03146___   1288 TGGACAGAGAACGTCAAGCAGGCTCACTATATCGCGGACCGACTTCAAGC   1337
                     ||||||||.|||.|.|||||.||.||..||||.||.|...|.|||.||||
BPUM_1857___d   1285 TGGACAGAAAACTTAAAGCATGCCCATGATATTGCTGCAAGCCTTGAAGC   1334

BSNT_03146___   1338 CGGAACCGTTTGGGTCAACTGCTATAATGTGTTTGACGCGGCGTCTCCAT   1387
                     .||.||..||||||||||||||||.||.||.|||||.||.||.||.||.|
BPUM_1857___d   1335 AGGCACGATTTGGGTCAACTGCTACAACGTCTTTGATGCTGCCTCCCCGT   1384

BSNT_03146___   1388 TTGGCGGTTATAAACAGTCAGGACTCGGACGAGAAATGGGATCATATGCC   1437
                     ||||.||.||.||.||.|||||.||.||..||||||||||||||||.|||
BPUM_1857___d   1385 TTGGAGGATACAAGCAATCAGGTCTTGGCAGAGAAATGGGATCATACGCC   1434

BSNT_03146___   1438 TTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTA   1487
                     .|..|.||.||.|||||||||||||||||.|||.|.|||||..|||||||
BPUM_1857___d   1435 CTTAACAACTATACAGAAGTCAAAAGTGTGTGGATTAACCTCCAAGACTA   1484

BSNT_03146___   1488 A   1488
                     |
BPUM_1857___d   1485 A   1485


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