Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03151 and BPUM_1860
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:38
# Commandline: needle
# -asequence dna-align/BSNT_03151___yocS.1.24716.seq
# -bsequence dna-align/BPUM_1860___yocS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03151___yocS-BPUM_1860___yocS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03151___yocS-BPUM_1860___yocS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03151___yocS
# 2: BPUM_1860___yocS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1009
# Identity: 656/1009 (65.0%)
# Similarity: 656/1009 (65.0%)
# Gaps: 101/1009 (10.0%)
# Score: 2102.5
#
#
#=======================================
BSNT_03151___ 1 ATGGACATCATTAGAAAAATAAGTCATTTTGCAGGACAAACCTTTGGCAT 50
|||.|.||..||..||..||.|||||.||||||||....||.||||..||
BPUM_1860___y 1 ATGAAGATTCTTTTAAGTATTAGTCAGTTTGCAGGTAGGACGTTTGCGAT 50
BSNT_03151___ 51 ATGGGTCATTGTTTTTGCAGTGCTGGGATTTTCTTTCCC-------ATCT 93
.|||||||||||.||||||.|.||.|||||..|.||.|| .|||
BPUM_1860___y 51 TTGGGTCATTGTCTTTGCATTTCTTGGATTCGCCTTTCCTGCGGAATTCT 100
BSNT_03151___ 94 TTATTTACGTGGATCAGTTCTTATATTACGATTTTTCTTGGCATTATCAT 143
.|| .|..|||| |||||||||.|..||||.||.||.|||||.||
BPUM_1860___y 101 CTA--AAATTGGA-----TCTTATATTCCTTTTTTACTCGGTATTATTAT 143
BSNT_03151___ 144 GTTTGGGATGGGCCTTAC----ACTGCAAGCCGATGATTTCAAAGAGCTG 189
||||||||||||.||||| .|| ||.||.|||||.|||||.|||
BPUM_1860___y 144 GTTTGGGATGGGGCTTACTTTATCT----GCTGAAGATTTTAAAGAACTG 189
BSNT_03151___ 190 GTCAGAAAGCCTTGGCAAGTTATTATTGGAGTAATAGCTCAGTATACGAT 239
.|..||||.|||....|.|||.|.||.||.|||.|..|.|||||.||..|
BPUM_1860___y 190 TTTCGAAAACCTCTTTATGTTCTGATCGGGGTACTGACGCAGTACACACT 239
BSNT_03151___ 240 CATGCCGCTCGTTGCTTTCGGCCTCGCATTT------------GGGCTTC 277
||||||||| .|||||.||| ||.||..
BPUM_1860___y 240 CATGCCGCT------------TCTCGCCTTTTTGTTAGCTTACGGACTAA 277
BSNT_03151___ 278 ATCTTCCAGCTGAAATCGCAGTTGGTGTTATTCTTGTCGGCTGCTGTCCC 327
..||.||..|.|||||||||||.||.|||.||||.||.|||||.||.||.
BPUM_1860___y 278 GACTCCCGTCCGAAATCGCAGTAGGAGTTGTTCTCGTAGGCTGTTGCCCA 327
BSNT_03151___ 328 GGGGGAACTGCATCTAATGTTATGACATTCTTAGCAAAAGGAAATACTGC 377
||.||.||.|||||.||.||||||||.||.||.||.|||||||||||.||
BPUM_1860___y 328 GGCGGTACAGCATCGAACGTTATGACTTTTTTGGCGAAAGGAAATACAGC 377
BSNT_03151___ 378 CCTTTCTGTTGCGGTTACGACAATTTCTACCTTATTGGCACCTGTTGTAA 427
..|.|||||.||.||.||.||.||.||.||.|||.|.||.||..||.|||
BPUM_1860___y 378 TTTATCTGTAGCTGTCACTACCATATCAACATTACTTGCGCCGTTTTTAA 427
BSNT_03151___ 428 CACC-GTTGTTGATTATGCTGTTTGCCAAAGAATGGCTTCCTGTCTCGCC 476
|.|| ||| ||.|||.|..|.|||||.|||...|||.|.|||||.|||||
BPUM_1860___y 428 CCCCTGTT-TTCATTTTAATTTTTGCAAAATCTTGGTTACCTGTATCGCC 476
BSNT_03151___ 477 GG--GGTCTTTGTTTATCTCAATCTTACAGGCGGTTTTATTTCCGATCAT 524
.| |..||.|.|||| |||||..||||.|..||..|..||||.||..|
BPUM_1860___y 477 AGAAGCACTATTTTTA--TCAATTGTACAAGTTGTGCTCATTCCTATTGT 524
BSNT_03151___ 525 TGCAGGTCTGATTGTCAAAATGTTTTTCAGAAAACAAGTGGCAAAAGCCG 574
...|||..|.||.||.|||.|.|||||||.|||||||||..|..|.||.|
BPUM_1860___y 525 CTTAGGGGTCATCGTTAAATTATTTTTCAAAAAACAAGTAACCTATGCGG 574
BSNT_03151___ 575 TACATGCCCTTCCGCTTGTTTCTGTCATTGGCATCGTTGCGATTGTCTCA 624
|.||.||.||.||||||||.||||||...||.||.|||..|||..|..||
BPUM_1860___y 575 TTCAAGCACTACCGCTTGTGTCTGTCGCCGGAATTGTTATGATCATTGCA 624
BSNT_03151___ 625 GCTGTCGTCAGCGGCAATCGGGAAA----ATCTGCTTCAATCGGGGTTGC 670
||..|.|||||.|..||| ||| |..|.||||||||.||..|||
BPUM_1860___y 625 GCGATTGTCAGTGCAAAT----AAAGAGCAGATTCTTCAATCTGGTCTGC 670
BSNT_03151___ 671 TCATTTTTTCAGTTGTTATCCTGCATAATGGTATCGGTTATTTACTTGGG 720
|.||.||..|.|||||.|||.|.||||||||..|.|||..||||.||||.
BPUM_1860___y 671 TAATATTGGCCGTTGTGATCTTACATAATGGACTTGGTCTTTTATTTGGT 720
BSNT_03151___ 721 TTTCTTTGTGCAAAGCTTTTAAAAATGGATTACCCGTCTCAAAAAGCGAT 770
|.||||..|||||||...|..|||||||||..|||.||||.||.|||.||
BPUM_1860___y 721 TATCTTATTGCAAAGTGGTGCAAAATGGATATCCCTTCTCGAAGAGCCAT 770
BSNT_03151___ 771 TGCAATCGAAGTCGGCATGCAAAACTCCGGGCTTGGGGCTGCACTTGCCA 820
..|.||.|||||.||||||||||||||.||.|||||.||.||.||.||.|
BPUM_1860___y 771 CTCGATTGAAGTAGGCATGCAAAACTCTGGACTTGGTGCAGCTCTAGCAA 820
BSNT_03151___ 821 CGGCTCATTTCTCACCGCTATCTGCCGTACCAAGCGCAATATTCAGTGTG 870
|.||.||.|||||.||.||..|.|||||||||||.||.||.||.||||||
BPUM_1860___y 821 CAGCACACTTCTCTCCACTTGCAGCCGTACCAAGTGCCATTTTTAGTGTG 870
BSNT_03151___ 871 TGGCATAACCTTTCAGGTTCTATGCTTGCAACATATTGGTCCAAA----- 915
||||||||..|.||.|||||...||||||.|||||||||||.|||
BPUM_1860___y 871 TGGCATAATTTATCCGGTTCCTGGCTTGCGACATATTGGTCAAAAAGAGG 920
BSNT_03151___ 916 --------AAAGTGAAAAAGATACAAGCTGGATCCGAAAGCAGCAATCTA 957
||||||||||..|.|.|||||.|
BPUM_1860___y 921 AAATGCTGAAAGTGAAAAGAAAAAAAGCTAG------------------- 951
BSNT_03151___ 958 TCACTTTAA 966
BPUM_1860___y 951 --------- 951
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