Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03152 and BPUM_1861

See Amino acid alignment / Visit BSNT_03152 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:38
# Commandline: needle
#    -asequence dna-align/BSNT_03152___odhB.1.24716.seq
#    -bsequence dna-align/BPUM_1861___odhB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03152___odhB-BPUM_1861___odhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03152___odhB-BPUM_1861___odhB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03152___odhB
# 2: BPUM_1861___odhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1319
# Identity:     958/1319 (72.6%)
# Similarity:   958/1319 (72.6%)
# Gaps:         127/1319 ( 9.6%)
# Score: 3534.0
# 
#
#=======================================

BSNT_03152___      1 ATGGCGGAAATTAAGGTACCTGAATTAGCAGAATCAATCTCAGAAGGAAC     50
                     ||||||||||||||.||||||||||||||.|||||.|||||.||||||||
BPUM_1861___o      1 ATGGCGGAAATTAAAGTACCTGAATTAGCGGAATCGATCTCGGAAGGAAC     50

BSNT_03152___     51 AATAGCCCAATGGTTAAAGCAGCCTGGTGACTATGTAGAACAGGGTGAAT    100
                     .|||||.||||||.|.||||||||.||.||.|||||.||||||||.||||
BPUM_1861___o     51 GATAGCTCAATGGCTCAAGCAGCCGGGCGATTATGTGGAACAGGGAGAAT    100

BSNT_03152___    101 ATCTGCTTGAACTAGAAACGGATAAAGTGAATGTTGAATTGACAGCAGAA    150
                     |.|||.|.||.||.|||||.||||||||.|||||.|||.|||||||.|||
BPUM_1861___o    101 ACCTGTTAGAGCTTGAAACAGATAAAGTCAATGTCGAACTGACAGCCGAA    150

BSNT_03152___    151 GAATCGGGTGTACTTCAAGAGGTATTGAAAGATTCGGGTGATACCGTCCA    200
                     |||||.||||||||..||||.||..||||||||||.|||||.||.||.||
BPUM_1861___o    151 GAATCTGGTGTACTCAAAGAAGTGCTGAAAGATTCTGGTGACACTGTACA    200

BSNT_03152___    201 GGTCGGAGAAATTATCGGTACGATTTCAGAAGGCGCGGGTGAA-------    243
                     .||.||||||.|.|||||.||.|||.||      |||||||||       
BPUM_1861___o    201 AGTTGGAGAAGTCATCGGAACAATTGCA------GCGGGTGAAGCTGGCG    244

BSNT_03152___    244 ------AGTTCTGCCCCTGCTCCTACAGAGAAAGCA---GAAAGCAAGGA    284
                           |||    ||.|.|||||         ||||   |  ||||||  
BPUM_1861___o    245 GAAGCGAGT----CCGCAGCTCC---------AGCACCTG--AGCAAG--    277

BSNT_03152___    285 AAG-------------CGTAAAAGAAGAGAAACAGGCTGAACCAGCTGCA    321
                      ||             ||  |||||.|   |||.||||      |||||.
BPUM_1861___o    278 -AGTCTGCACCAGCTCCG--AAAGATG---AACCGGCT------GCTGCT    315

BSNT_03152___    322 CAAGAGGTGAGCGAGGAAGCA---CAATCTGAAG---CAAAATC------    359
                     |||      |..||.||||||   .||   ||||   |.|||||      
BPUM_1861___o    316 CAA------AAAGAAGAAGCAGTGAAA---GAAGAGCCGAAATCTGGTAA    356

BSNT_03152___    360 ---AAGAACGATCGCTTCTCCGTCGGCCCGTAAGCTGGCGAGAGAAAAAG    406
                        .|||||.|||||||||||..|.||..|.||.||.||||||||.||.|
BPUM_1861___o    357 TGGCAGAACCATCGCTTCTCCTGCAGCTAGAAAACTAGCGAGAGAGAAGG    406

BSNT_03152___    407 GAATTGACCTGTCTCAAGTTCCAACTGGAGATCCGCTTGGAAGAGTGCGC    456
                     |..|.|||.|.|||.||.|||||||.|.|||||||||.||.||.||.||.
BPUM_1861___o    407 GGCTAGACTTATCTGAAATTCCAACCGTAGATCCGCTGGGCAGGGTACGA    456

BSNT_03152___    457 AAGCAGGATGTCG---------AAGCGTACGAAAAACC------GGCATC    491
                     |||||||||||.|         ||..|.|.|||..|||      .|||.|
BPUM_1861___o    457 AAGCAGGATGTTGCTTCTTATCAAAAGAATGAAGCACCTGCAAGTGCACC    506

BSNT_03152___    492 AAAACCGGCTCCTCAGCAAAAGCA---GCAGCCTCAGGCTCAAAAAGCAC    538
                     ||||.|.||.|     ||||||||   ||.||    ||..|||||.|.||
BPUM_1861___o    507 AAAAGCCGCGC-----CAAAAGCAAATGCTGC----GGTGCAAAATGAAC    547

BSNT_03152___    539 -AGCAAAGCTTTGAAAAACCTGTTGAA-GTGCAAAAAATGTCACGCCGCA    586
                      ||||       |.|||.||.|||||| ||| |.|.||||||.|||||.|
BPUM_1861___o    548 AAGCA-------GGAAAGCCAGTTGAACGTG-AGAGAATGTCGCGCCGGA    589

BSNT_03152___    587 GACAAACGATTGCAAAACGCCTTGTAGAGGTACAGCAAACATCAGCGATG    636
                     |||||||||||||.|||||..|.||.|||||.||||||||..|.||.|||
BPUM_1861___o    590 GACAAACGATTGCCAAACGTTTAGTTGAGGTTCAGCAAACGGCTGCAATG    639

BSNT_03152___    637 CTGACCACATTTAATGAAGTGGACATGACGGCTGTCATGAATCTCAGAAA    686
                     |||||.||||||||||||||.||.|||||.|||||.|||.|..|.|||||
BPUM_1861___o    640 CTGACGACATTTAATGAAGTAGATATGACAGCTGTGATGGACTTAAGAAA    689

BSNT_03152___    687 ACGCCGCAAAGATCAATTCTTTGAGCAAAATGAAGTGAAGCTCGGCTTTA    736
                     .|||||.||||||...|||.||||.||||||||.||.|||||.||.||.|
BPUM_1861___o    690 GCGCCGTAAAGATGCCTTCCTTGAACAAAATGATGTAAAGCTTGGTTTCA    739

BSNT_03152___    737 TGTCTTTCTTCACGAAAGCGGTCGTGGCTGCATTGAAAAAATATCCGCTG    786
                     ||||.||||||||.|||||.||.||.||.|||.||||.||||||||||||
BPUM_1861___o    740 TGTCCTTCTTCACAAAAGCAGTTGTAGCAGCACTGAAGAAATATCCGCTG    789

BSNT_03152___    787 TTGAATGCAGAAATTCAAGGCGATGAG-TTGATCGTTAAAAAATTCTACG    835
                     .|.||.||||||||||||||.|||||| ||| ||.|.||.||||||||.|
BPUM_1861___o    790 CTTAACGCAGAAATTCAAGGTGATGAGCTTG-TCTTGAAGAAATTCTATG    838

BSNT_03152___    836 ATATCGGAATCGCTGTTGCTGCTGATGAAGGCCTTGTCGTTCCGGTTGTG    885
                     |.|||||.|||||||||||||||.|.|||||.||||||||.||||||||.
BPUM_1861___o    839 ACATCGGCATCGCTGTTGCTGCTAACGAAGGACTTGTCGTACCGGTTGTC    888

BSNT_03152___    886 CGGGATGCGGATCGCCTGACATTTGCAGGAATCGAAAAAGAGATCGGCGA    935
                     ||.|||||.||..|..||.|.||||||||.||.|||||.||.||.||..|
BPUM_1861___o    889 CGTGATGCAGACAGATTGTCGTTTGCAGGGATTGAAAAGGAAATTGGTCA    938

BSNT_03152___    936 GCTTGCGAAAAAAGCAAGAAACAATAAATTAACCCTTAGCGAGCTTCAGG    985
                     .|||||||||||||||.||.|.||.|||||..|.||.|..|||||.||.|
BPUM_1861___o    939 TCTTGCGAAAAAAGCACGAGATAACAAATTGTCTCTAAATGAGCTACAAG    988

BSNT_03152___    986 GAGGCTCTTTCACGATTACAAACGGAGGGACTTTCGGTTCATTGATGTCA   1035
                     |.||.||.||||||||.||||||||.||.||.|||||||||.||.|.|||
BPUM_1861___o    989 GTGGATCATTCACGATCACAAACGGCGGAACATTCGGTTCACTGCTTTCA   1038

BSNT_03152___   1036 ACTCCAATTTTAAACAGCCCGCAAGTCGGTATACTGGGCATGCATAAGAT   1085
                     ||.|||||||||||||||||.|||||.||.||..|.||.|||||.||.||
BPUM_1861___o   1039 ACACCAATTTTAAACAGCCCTCAAGTTGGAATTTTAGGGATGCACAAAAT   1088

BSNT_03152___   1086 TCAGCTGCGCCCTGTAGCCATTGATGAAGAGCGTTTCGAAAACCGTCCGA   1135
                     ||||||.||.|||||.||.|||||||||||.|||||.||.||||||||||
BPUM_1861___o   1089 TCAGCTTCGACCTGTGGCAATTGATGAAGAACGTTTTGAGAACCGTCCGA   1138

BSNT_03152___   1136 TGATGTATATCGCTTTATCTTATGATCACCGAATTGTAGACGGTAAAGAA   1185
                     ||||||||.|.|||.|.|||||.||.|||||.|||||.||.||.||||||
BPUM_1861___o   1139 TGATGTATTTAGCTCTTTCTTACGACCACCGGATTGTCGATGGAAAAGAA   1188

BSNT_03152___   1186 GCGGTTGGTTTCCTCGTGACAATCAAAAATTTACTGGAAGATCCTGAACA   1235
                     ||.|||||.|||||.||.||.||.|||||.||.||.||||||||.||.||
BPUM_1861___o   1189 GCAGTTGGATTCCTTGTCACGATTAAAAACTTGCTTGAAGATCCAGAGCA   1238

BSNT_03152___   1236 GCTTTTATTAGAAGGATAA   1254
                     |||.||..|.|||||||||
BPUM_1861___o   1239 GCTATTGCTTGAAGGATAA   1257


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