Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03153 and BPUM_1862
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:39
# Commandline: needle
# -asequence dna-align/BSNT_03153___kgd.1.24716.seq
# -bsequence dna-align/BPUM_1862___sucA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03153___kgd-BPUM_1862___sucA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03153___kgd-BPUM_1862___sucA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03153___kgd
# 2: BPUM_1862___sucA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2902
# Identity: 2122/2902 (73.1%)
# Similarity: 2122/2902 (73.1%)
# Gaps: 134/2902 ( 4.6%)
# Score: 7512.5
#
#
#=======================================
BSNT_03153___ 1 ATGTTTCAAAATAGTATGAAACAACGAATGAATTGGGAAGATTTTTACGG 50
||||||||||||..|.|||||||||...|||.|||||||||.|||.|.||
BPUM_1862___s 1 ATGTTTCAAAATGATGTGAAACAACCGTTGAGTTGGGAAGAATTTCATGG 50
BSNT_03153___ 51 TCCGAACCTCGGCTATGCGCTGGAGCTTTACGATCAGTATACCCAGGATC 100
|||||||||||||||||.|||.|||||.||||||||||||..||||||||
BPUM_1862___s 51 TCCGAACCTCGGCTATGTGCTCGAGCTCTACGATCAGTATGTCCAGGATC 100
BSNT_03153___ 101 CGAACAGCATTGACCCGGATTTGAAG--------GAAATGTTCGACGAGC 142
|.|..||..|||| ||||| |..||.||.||.||.|
BPUM_1862___s 101 CTACTAGTGTTGA--------TGAAGATCTAAGAGGCATATTTGATGAAC 142
BSNT_03153___ 143 TCGGTGCTCCGCCAAGCGATATAAAAGAGG-CCTCGGGAACAAAAGAAAA 191
|.|||||.||.||.||.||.||.||.|||| ..|.||||| |||||||||
BPUM_1862___s 143 TTGGTGCACCACCGAGTGAAATGAAGGAGGAAATTGGGAA-AAAAGAAAA 191
BSNT_03153___ 192 GGGACGT-GTTACAGCCGATCTGATTCAAAAGATCGCATCCGCAGTCAGA 240
..| ||| |||||..|.||.|..||.||||||||.|||||.|..||.|.|
BPUM_1862___s 192 TAG-CGTAGTTACTTCTGAACAAATCCAAAAGATAGCATCAGTCGTTAAA 240
BSNT_03153___ 241 CTTGCAGAAGATATCCGAACCTATGGCCATTTGAACGCTTCCGTCAATCC 290
||.||||||||.|||.||||.|||||||||||.||.||||||||||||||
BPUM_1862___s 241 CTGGCAGAAGACATCAGAACGTATGGCCATTTAAATGCTTCCGTCAATCC 290
BSNT_03153___ 291 GCTCAGAAAGGATGAGAAA----AAGAGCGAACTTTTTCCATTATCCGAT 336
.||..|.||.||..||.|| ||||| ||.|||||.|||...||.
BPUM_1862___s 291 TCTTCGCAAAGAAAAGGAATTACAAGAG----CTGTTTCCTTTAAAGGAG 336
BSNT_03153___ 337 TACGGGCTAACAGAAGAGGA----AATAAAA--GCAATACCTGCGTCTGT 380
|||||..||||||||||.|| ||.||.| .||||| |||.|
BPUM_1862___s 337 TACGGCTTAACAGAAGAAGACGTCAAGAATATTCCAATA------TCTAT 380
BSNT_03153___ 381 CAT-----CTGCAAAGACGCTCCTAAAAACATTACGAACGGTTTAGAAGC 425
.|| || |||||.||.|||.|||||.|.|||||..|||||||
BPUM_1862___s 381 TATTAGTCCT-----GACGCACCAAAACACATTTCAAACGGCATAGAAGC 425
BSNT_03153___ 426 CATTCAGTATTTACGAAATACGTATAAAAGAACCATCTCTTTTGAATTTG 475
||||.|..||||..|||||||||||||..|.||.||.||.|||||.||||
BPUM_1862___s 426 CATTAACCATTTGAGAAATACGTATAAGCGTACGATTTCATTTGAGTTTG 475
BSNT_03153___ 476 ACCATGTGCATGACTTCAAAGAGCGCGAGTGGCTGACAAGAAAGATTGAA 525
|.||.||.|||||.|||.|||||||..|.|||||..|||.|...||.||.
BPUM_1862___s 476 ATCACGTACATGATTTCGAAGAGCGGAACTGGCTCTCAAAATCAATCGAG 525
BSNT_03153___ 526 TCTGGCGAGCTGTTCCAGAAGAACTCAGCTGAAAAGCTGTCAG---CTGT 572
|||||.||..|.||..||||.||..||||.||.||.|| || ||||
BPUM_1862___s 526 TCTGGTGAATTATTTAAGAAAAAACCAGCCGATAAACT---AGTTTCTGT 572
BSNT_03153___ 573 GCTGGAAAGATTGACAGAAGTAGAGGGCTTTGAGCAGTTTTTGCACCGCA 622
..|..|.|||||.||||||||.|||...||.||.||||||.|.||....|
BPUM_1862___s 573 ATTCAAGAGATTAACAGAAGTTGAGCAGTTCGAACAGTTTCTTCATAAAA 622
BSNT_03153___ 623 CATTCGTCGGGCAGAAGCGCTTTTCCATTGAGGGTCTGGACGCTCTTGTT 672
||||.||.|||||.||||||||.||.||.||.|||.|.|||||.|||||.
BPUM_1862___s 623 CATTTGTTGGGCAAAAGCGCTTCTCGATAGAAGGTTTAGACGCACTTGTC 672
BSNT_03153___ 673 CCAGTGCTTGATGACATTATTGCACAATCTGTCAAATCAGGCACGACAAG 722
|||||.||||||||.||||||.||.|.|||||.|.|..|||.||..|||.
BPUM_1862___s 673 CCAGTACTTGATGAAATTATTTCAGAGTCTGTTACACAAGGGACTTCAAA 722
BSNT_03153___ 723 CGTCAACATCGGGATGGCGCACAGGGGACGCCTGAATGTCTTGGCACATG 772
..|.|||||.||.|||||.|||||.||.||..|.|||||.||.|||||||
BPUM_1862___s 723 TATTAACATTGGAATGGCACACAGAGGCCGTTTAAATGTATTAGCACATG 772
BSNT_03153___ 773 TGCTCGGCAAACCGTATGAAATCATCTTCTCTGAATTCCAGCATGCGCCG 822
||.|.||.||.||.|||||.||.||.|||||.||||||||||||||||||
BPUM_1862___s 773 TGTTAGGAAAGCCATATGAGATTATTTTCTCGGAATTCCAGCATGCGCCG 822
BSNT_03153___ 823 AATAAAGATCTTGTCCCGTCTGAGGGATCAATTGGAATCAGCTACGGATG 872
||||||||.||.||.||.||.||.||.||.|||||.||||||||||||||
BPUM_1862___s 823 AATAAAGAGCTCGTTCCATCAGAAGGCTCTATTGGCATCAGCTACGGATG 872
BSNT_03153___ 873 GACAGGGGATGTCAAATACCATTTGGGGGCGAATCGGGAGCTTCAAGACG 922
|||.||.|||||.||.||||||.|.||.|||.||||..|..||.||||||
BPUM_1862___s 873 GACTGGTGATGTAAAGTACCATCTAGGAGCGGATCGTCAAATTAAAGACG 922
BSNT_03153___ 923 CTGAAACAAAATCAGCGCGCATTACGTTAGCGAACAATCCGAGCCACTTG 972
..||.|||||....|||.|..|.|||.|.||.||.||.||.||.|||.|.
BPUM_1862___s 923 AAGATACAAAGAGTGCGAGAGTCACGCTTGCTAATAACCCAAGTCACCTA 972
BSNT_03153___ 973 GAATTTATCAATCCGATTGTTGAAGGCAGCACAAGAGCAGCACAGGAAAC 1022
|||||.||..||||.||..|||||||.||||||.|.||.||.||||||..
BPUM_1862___s 973 GAATTCATTGATCCAATCATTGAAGGTAGCACACGTGCCGCTCAGGAATT 1022
BSNT_03153___ 1023 GCGAACACAAAGCGGATACCCGGTACAAGA---TGAAA---CAAAATCGC 1066
|||.||.||||..|||||.||.|..||||| ||||| ||
BPUM_1862___s 1023 GCGTACTCAAAAGGGATATCCAGCTCAAGACGTTGAAAAGGCA------- 1065
BSNT_03153___ 1067 TT-GCCATTTTAATCCATGGAGACGCTGCATTTCCTGGGGAAGGAATTGT 1115
|| |||||.|||||.|||||.||.||.|||||||||||.|||||||||||
BPUM_1862___s 1066 TTAGCCATCTTAATTCATGGTGATGCAGCATTTCCTGGAGAAGGAATTGT 1115
BSNT_03153___ 1116 AGCTGAAACATTGAATTTAAGCTCTTTAAA-----AGGGTATCAAGTAGG 1160
.||.||||||||.|||||||| |.|| |||.||||||||.||
BPUM_1862___s 1116 GGCAGAAACATTAAATTTAAG-----TCAACTTGTAGGCTATCAAGTGGG 1160
BSNT_03153___ 1161 CGGTGCGATTCATATTATCGCCAATAACATGATCGGATTTACAACAGAAA 1210
.||..||||.|||||.||.||.||.||.||||||||||||||.||.||||
BPUM_1862___s 1161 TGGAACGATCCATATCATTGCAAACAATATGATCGGATTTACGACGGAAA 1210
BSNT_03153___ 1211 GCGCTGAATCCAGATCGACAAAATATGCCAGCGACCTGGC-CAAGGGTTA 1259
||..||||||..|.||.||.||||||||.||.|||||.|| .|||||||
BPUM_1862___s 1211 GCAATGAATCTCGCTCAACGAAATATGCAAGTGACCTTGCAAAAGGGTT- 1259
BSNT_03153___ 1260 TGAAATTCCGATTGTTCACGTGAATGCGGACGATCCTGAAGCTTGTCTTT 1309
|||.|||||.|||||||||||.|||||.||.|||||.|||||.|||.|..
BPUM_1862___s 1260 TGAGATTCCAATTGTTCACGTCAATGCAGATGATCCAGAAGCATGTTTAG 1309
BSNT_03153___ 1310 CAGCTGTTAAGTTTGCGGTCGAATACCGAAAAACATTCAACAAGGATTTT 1359
||||||||.|.||.||.||.||||||||.|||...||.||.||||||||.
BPUM_1862___s 1310 CAGCTGTTCAATTAGCTGTGGAATACCGCAAACGCTTTAAGAAGGATTTC 1359
BSNT_03153___ 1360 CTGATTGATTTGATCGGGTACAGACGCTATGGACACAACGAAATGGATGA 1409
.|.|||||.||||||||.|||.|..|.|||||.||.||||||||||||||
BPUM_1862___s 1360 TTAATTGACTTGATCGGTTACCGCAGATATGGTCATAACGAAATGGATGA 1409
BSNT_03153___ 1410 ACCGTCAACCACTCAGCCAATGCTGTATGATGCTGTCAGAAAGCATCCGA 1459
.||.||.||.||||||||.|||||.||.|||||.|||||||||||....|
BPUM_1862___s 1410 GCCTTCTACGACTCAGCCGATGCTATACGATGCCGTCAGAAAGCACAAAA 1459
BSNT_03153___ 1460 CCGTCAAACAAATTTTCGCTGAAAAGCTGGTAAAAGAAGGCGTGCTTACC 1509
|.|||||..|.||.||.||.||.||.||.||...||||||..|.||.||
BPUM_1862___s 1460 CGGTCAAGAATATCTTTGCAGATAAACTTGTCTCAGAAGGTCTTCTAAC- 1508
BSNT_03153___ 1510 GAGGAAGTCGTTCAAAACATCG---AAAAATCG--------GTAACGAAG 1548
||| |.||||.|| |.|||||| |||.|||.|
BPUM_1862___s 1509 ---GAA-------AGAACAGCGTGAAGAAATCGAGCAGGCTGTAGCGACG 1548
BSNT_03153___ 1549 CGCATTGAGGATGCATATCAGAAAGTTCCGTCTAAAAAGGAACACACTGC 1598
.|.||.||.||.||.|||||.||.||.||.||.||.||.||.||.|| |.
BPUM_1862___s 1549 AGAATAGAAGAAGCCTATCAAAAGGTGCCTTCAAAGAAAGAGCATAC-GA 1597
BSNT_03153___ 1599 TT-GTGAAATTGAACTTCCAGAGCCTGTATCAAACGGTTTCCCAGATGTG 1647
|| ..|||||||||||.|||||.||.||||||||.||.|||||||..|||
BPUM_1862___s 1598 TTCAAGAAATTGAACTGCCAGAACCAGTATCAAATGGCTTCCCAGCAGTG 1647
BSNT_03153___ 1648 GACACTTCGATTGATTTTGATGTGCTCCGCAAGTTGAATGGCGAATTGAT 1697
||.||.|||.|.||.||||||||..|.||.|||.||||||..||||||||
BPUM_1862___s 1648 GATACATCGGTAGAATTTGATGTATTACGTAAGCTGAATGAAGAATTGAT 1697
BSNT_03153___ 1698 CAACTGGCCGGAGTC-ATTT--AATGTTTTCGGCAAGCTAAAGCGCATTT 1744
||.||||||||| | |||| || ||.||.||.|||||.||.||.||..
BPUM_1862___s 1698 CAGCTGGCCGGA--CGATTTCCAA-GTATTTGGTAAGCTTAAACGGATCC 1744
BSNT_03153___ 1745 TAGAAAGACGCGCCAAGGCGTTCGATGATGACAGAAAAGTGGAATGGTC- 1793
|.||||.|||.||.||.|.|||....||||||.|.|||||.||||||||
BPUM_1862___s 1745 TTGAAAAACGGGCAAAAGTGTTTACAGATGACCGTAAAGTAGAATGGTCA 1794
BSNT_03153___ 1794 TTTGGCAGAATCACTCGCGTTTGCTTCAATTATGAAAGACGGAACACCGA 1843
.|||| ||||.||||.||.|||||.||.||..|.||||||||.||.||.|
BPUM_1862___s 1795 CTTGG-AGAAGCACTTGCATTTGCATCTATATTAAAAGACGGTACGCCAA 1843
BSNT_03153___ 1844 TTCGTTTAACAGGACAGGATTCCGAGCGCGGAACGTTCGCCCAAAGAAAC 1893
||||..|.||.|||||||||||.||||||||.||.||.||.|||||||||
BPUM_1862___s 1844 TTCGAATGACCGGACAGGATTCAGAGCGCGGTACTTTTGCTCAAAGAAAC 1893
BSNT_03153___ 1894 CTTGTGCTTCATGACAGTGAGACGGGCAAAGAATTTGTGCCGCTTCATCA 1943
|||||.|||||.||||||.|.||.||.||.||||||.|..|.||||||.|
BPUM_1862___s 1894 CTTGTTCTTCACGACAGTCAAACTGGAAATGAATTTATTGCTCTTCATGA 1943
BSNT_03153___ 1944 CTTATCTGACTGC-AGCACATCATTTGCTGTTCATAACAGCCCGCTGTCT 1992
..||..||| ||| |.|.||||||||.||||||||||.||.||.|||||.
BPUM_1862___s 1944 GCTAAGTGA-TGCAAACGCATCATTTACTGTTCATAATAGTCCACTGTCA 1992
BSNT_03153___ 1993 GAAGGATCGGTTCTCGGTTTTGAATACGGCTATAACGTGCATTCACCGGA 2042
||.||.||.||..||||.||||||||.||.|||||.||..||||.||.||
BPUM_1862___s 1993 GAGGGCTCAGTCATCGGGTTTGAATATGGTTATAATGTCTATTCTCCTGA 2042
BSNT_03153___ 2043 AACGCTTGTTTTGTGGGAAGCACAGTACGGAGATTTTGCCAACGCTGCTC 2092
||||.|.||..|.|||||.||.||.|..|||||.||.||.||.||.||||
BPUM_1862___s 2043 AACGTTAGTCATTTGGGAGGCTCAATTTGGAGACTTCGCAAATGCGGCTC 2092
BSNT_03153___ 2093 AAGTGTATTTTGACCAATTTATTTCTGCCGGACGCGCGAAATGGGGCCAA 2142
||||||||||.||.|||||||||||.||.|||||.||.||||||||.|||
BPUM_1862___s 2093 AAGTGTATTTCGATCAATTTATTTCGGCTGGACGTGCAAAATGGGGACAA 2142
BSNT_03153___ 2143 AAATCCGGATTAGTCATGTTGCTCCCGCACGGTTACGAGGGACAGGGGCC 2192
|||||.||..||||.|||.|..|.||.||.||.||.||.|||||.||.||
BPUM_1862___s 2143 AAATCAGGTCTAGTGATGCTCTTGCCTCATGGATATGAAGGACAAGGTCC 2192
BSNT_03153___ 2193 TGAGCACTCAAGCGGAAGAATCGAGCGATTCCTG----CAGCTTGCAGCG 2238
||||||.|||||.|||||||..|||||||||||| ||||| ||.
BPUM_1862___s 2193 TGAGCATTCAAGTGGAAGAACAGAGCGATTCCTGCAATCAGCT----GCT 2238
BSNT_03153___ 2239 GAAAACAACTGGACGGTTGCCAACCTGACAAGCGCGGCACAGTATTTCCA 2288
||.||.||||||||.||.||.|||||.|||||.||.||.||.||.|||||
BPUM_1862___s 2239 GAGAATAACTGGACAGTGGCGAACCTCACAAGTGCAGCGCAATACTTCCA 2288
BSNT_03153___ 2289 TATTTTAAGAAGACAGGCTAAAATGCTGCTTCGTGAAGAAATCAGACCGC 2338
.|||.|||||||||||||.||.|||||||||||.|||||.||..|.||||
BPUM_1862___s 2289 CATTCTAAGAAGACAGGCGAAGATGCTGCTTCGCGAAGAGATTCGTCCGC 2338
BSNT_03153___ 2339 TCGTCATTATGACGCCGAAGAGCCTTCTTCGCAACCCAAATACGGTGTCG 2388
|.|||||.|||||.||||||||.||.|||||.|||||.||..|..||||.
BPUM_1862___s 2339 TTGTCATCATGACACCGAAGAGTCTGCTTCGTAACCCGAACTCATTGTCT 2388
BSNT_03153___ 2389 GAAGTGCAGGAGCTCAGCGAAAGCCGCTTCCAGCCTGTTTATGAACAGTC 2438
|||||.|||||..|.|..||..|.|..|||||.||.|||..||||||..|
BPUM_1862___s 2389 GAAGTCCAGGAATTAACGGATGGACAGTTCCAACCAGTTCTTGAACAACC 2438
BSNT_03153___ 2439 GGGACTTTCTCATGACTATGAAAAAGTAACCAGACTTGTATTATCCAGCG 2488
.||.|||...|||||..|||||||||||.|..|.|||||..||||.||||
BPUM_1862___s 2439 AGGCCTTGTGCATGATCATGAAAAAGTATCGCGCCTTGTGCTATCTAGCG 2488
BSNT_03153___ 2489 GTAAAGTGTCTATAGACATTAGCGATCATTTTAATAAGTTAGAAGA--CG 2536
|.||.||.||.||.||.|||||.||||.|||||.|.|..|.||||| ||
BPUM_1862___s 2489 GGAAGGTATCCATTGATATTAGTGATCGTTTTACTCAAATGGAAGAGCCG 2538
BSNT_03153___ 2537 GTAAAGAGTGGCTTCACATTGCGAGAATCGAACAGCTGTATCCATTCCCG 2586
|||||.||||||||||||||||||.|.|||||.||.|||||||||||.
BPUM_1862___s 2539 --AAAGATTGGCTTCACATTGCGAGAGTGGAACAACTATATCCATTCCCA 2586
BSNT_03153___ 2587 GCAAAAGGAGTCAAAG-AATTATTTGCAAAACTTCCGAACCTGAAAGAAA 2635
||.||||...|.|||| .||| ||..|||||||..|.|||.|..||||||
BPUM_1862___s 2587 GCCAAAGATATTAAAGCGATT-TTATCAAAACTAACAAACTTAGAAGAAA 2635
BSNT_03153___ 2636 TCGTTTGGGTGCAGGAAGAGCCGCAGAACATGGGGGCTTGGGGTTATA-T 2684
||||.|||..|||.||||||||.||.||.||||||||||||||.||.| |
BPUM_1862___s 2636 TCGTATGGACGCAAGAAGAGCCACAAAATATGGGGGCTTGGGGATACATT 2685
BSNT_03153___ 2685 CAGCCCGTATTTGAC-AGAGATTGCACCAGAGGGAGTAAGCGTTCAATAT 2733
.|| ||.||||| || .||.|||||.||.||...|||||..||.|..||.
BPUM_1862___s 2686 GAG-CCATATTT-ACGTGAAATTGCGCCTGAAAAAGTAAAAGTACGTTAC 2733
BSNT_03153___ 2734 ATTGGACGAAGAAGACGATCCAGCCCTGCAGAGGGAGATCCGACAGTTCA 2783
||.||.|||||||||||.||.||..|.||.|||||.|||||.||.||.||
BPUM_1862___s 2734 ATCGGCCGAAGAAGACGTTCAAGTACGGCTGAGGGCGATCCAACTGTGCA 2783
BSNT_03153___ 2784 TAAAAAAGAACAGGAACGTATTGTATCTGATAGCTTGACTCGCAAAAACT 2833
||||||||||||.|||||.|||||||||||||||||||||||||||||||
BPUM_1862___s 2784 TAAAAAAGAACAAGAACGAATTGTATCTGATAGCTTGACTCGCAAAAACT 2833
BSNT_03153___ 2834 AA 2835
||
BPUM_1862___s 2834 AA 2835
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