Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03162 and BPUM_1867

See Amino acid alignment / Visit BSNT_03162 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:39
# Commandline: needle
#    -asequence dna-align/BSNT_03162___yojJ.1.24716.seq
#    -bsequence dna-align/BPUM_1867.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03162___yojJ-BPUM_1867.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03162___yojJ-BPUM_1867.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03162___yojJ
# 2: BPUM_1867
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 680
# Identity:     421/680 (61.9%)
# Similarity:   421/680 (61.9%)
# Gaps:         130/680 (19.1%)
# Score: 1223.5
# 
#
#=======================================

BSNT_03162___      1 ATGCGCTATGAGCAGATATC----------AGAA----AATGCGTTCAAG     36
                            ||||.||   |||          ||||    |||   ||.|||
BPUM_1867          1 -------ATGATCA---ATCGTACAAATGAAGAAGCACAAT---TTAAAG     37

BSNT_03162___     37 GG-----GAAAATACAGGTGTACCTAGAGCAAATATTAGG--TGATGCA-     78
                     .|     ||.||.|||       ||.||..||| ||||.|  .|||||| 
BPUM_1867         38 TGGGTATGAGAACACA-------CTTGATGAAA-ATTATGAAAGATGCAA     79

BSNT_03162___     79 -------TCTCTAATCTTGAAAACGCTTCACGAAAAAGACCAGTGTCTCC    121
                            |.||.|.|||        |||.|.||||..||.||.|||||.|
BPUM_1867         80 GTGACATTATCGATTCT--------CTTGATGAAATTGAGCAATGTCTAC    121

BSNT_03162___    122 TTTGTGA---------ATTAGATGATTTGGGGCACGTTTTTCAGGA----    158
                     |||||||         ||||.|||||         |..|||.|.||    
BPUM_1867        122 TTTGTGATCTTGAGTCATTACATGAT---------GAGTTTAATGAAATG    162

BSNT_03162___    159 CATGCAGGGGATTGCATCCTCCTTTTATTTGCAATCATACATTGAGGAAT    208
                     |||||||.|    ||.|||||.||||||||||||||.||.||.||.||||
BPUM_1867        163 CATGCAGAG----GCTTCCTCGTTTTATTTGCAATCGTATATGGAAGAAT    208

BSNT_03162___    209 TTACGCCGGCATTTATTGAGCTGGCCAA--------GGCGATTAAAGCCT    250
                     ..||.||.|.||||     |||   |||        .||.|||.||..||
BPUM_1867        209 ACACACCCGGATTT-----GCT---CAATTTTCGTTAGCCATTGAAAACT    250

BSNT_03162___    251 TATCGGAACATAAGCATGGAGCTTTAATTGTGATTGAAAGAGC-AGACCC    299
                     ||||..||||.||.||.||.||.||.|||||||||.|||| || .||...
BPUM_1867        251 TATCAAAACAAAAACACGGGGCATTGATTGTGATTCAAAG-GCGGGATGA    299

BSNT_03162___    300 GGTTGAACGTTTTATTCAAAAAGGCACCTCCCTACACGCCGAGATCAGCT    349
                     ||||||...|||||||||||.|||.||....||.||.||..|.||.||..
BPUM_1867        300 GGTTGAGGATTTTATTCAAAGAGGGACAAATCTTCATGCGAAAATAAGTG    349

BSNT_03162___    350 CTTCATTAATTGAAAGCATCTTTTTTCCC-GGAAACCCTCTTCATGACG-    397
                     |.||||||||||||||||| |||.|.||| |||||.||.||||||||.| 
BPUM_1867        350 CATCATTAATTGAAAGCAT-TTTCTACCCAGGAAATCCACTTCATGATGG    398

BSNT_03162___    398 -GCGCTTTATTAGTGAGGGAAAACAAACTCGTGTCAGCAGCCAATGTGCT    446
                      ||||||  |||||.|..|||||.|..|||||.||.||.||.||||||||
BPUM_1867        399 TGCGCTT--TTAGTCAAAGAAAATACGCTCGTATCTGCGGCAAATGTGCT    446

BSNT_03162___    447 CCCGCTGACGAC-GAAGGAAGT--GGATATCCATT---TGGGAACCCGGC    490
                     .||.||.||..| .||..||||  |    ||| ||   |.||.||..|.|
BPUM_1867        447 GCCACTTACTTCAAAAAAAAGTCAG----TCC-TTCTCTCGGGACAAGAC    491

BSNT_03162___    491 ACCGGGCGGCTCTCGGTATGTCGGGCTAT-ACGGATGCACTGGTGCTCGT    539
                     ||.|.||.||..|.||..|.||.||| || ||.||||||||.||.|||||
BPUM_1867        492 ACAGAGCTGCGATTGGACTCTCTGGC-ATGACCGATGCACTTGTTCTCGT    540

BSNT_03162___    540 GGTTTCAGAGGAAACAGGTAAGATGTCGTTTGCCAAAGACGGTGTATTAT    589
                     .|||||||||||||||||.||.|||||.|||||.|||||.||.||..|.|
BPUM_1867        541 CGTTTCAGAGGAAACAGGGAAAATGTCATTTGCGAAAGAAGGCGTCCTTT    590

BSNT_03162___    590 ATCCGTTAATTTCAC----CAAGAACGTAA    615
                     |||||     .||||    .||||.|.|.|
BPUM_1867        591 ATCCG-----CTCACTGTAAAAGAGCCTGA    615


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