Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03172 and BPUM_1872

See Amino acid alignment / Visit BSNT_03172 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:40
# Commandline: needle
#    -asequence dna-align/BSNT_03172___yojE.1.24716.seq
#    -bsequence dna-align/BPUM_1872___rarD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03172___yojE-BPUM_1872___rarD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03172___yojE-BPUM_1872___rarD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03172___yojE
# 2: BPUM_1872___rarD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 990
# Identity:     590/990 (59.6%)
# Similarity:   590/990 (59.6%)
# Gaps:         177/990 (17.9%)
# Score: 1574.5
# 
#
#=======================================

BSNT_03172___      1 ATGCAATATTCA--GA--AACA--AA--AAAAGGCGTTATTTACACAGCC     42
                             ||.|  ||  ||||  ||  ||||||.|||.|.||.||.||.
BPUM_1872___r      1 --------TTGAACGAACAACAGCAATCAAAAGGTGTTCTCTATACGGCA     42

BSNT_03172___     43 GTTTCCTTTATCA-TGTGGGGCCTGTTTCCGCTCTATTGGAAGCTTCTCG     91
                     |..||.|||| || |.|||||..|.||.|||.|.||||||||.||..|.|
BPUM_1872___r     43 GCATCTTTTA-CATTATGGGGGTTATTCCCGTTATATTGGAAACTGATGG     91

BSNT_03172___     92 AACA----GCTGCCGGCTCTTGATATTTTGGCTCATCGTATTATATGGTC    137
                     ||||    .|..|.|||    ||.|||||.||.||..|.|||.|||||||
BPUM_1872___r     92 AACATATTTCGTCAGGC----GAAATTTTAGCGCACAGAATTTTATGGTC    137

BSNT_03172___    138 TTTTGTTTTTATGT---GTATCGTACTTTTTTTCTTGCGGCAATGGAAAA    184
                     .|||||||||||||   ||||..|.||.|.|||             ||||
BPUM_1872___r    138 ATTTGTTTTTATGTGCGGTATTCTTCTGTATTT-------------AAAA    174

BSNT_03172___    185 TAGG-----------ATG--------GCAGGAGCTGC--GCTCTCTGAAA    213
                     .|.|           |||        |.|||..|| |  ||||..||..|
BPUM_1872___r    175 CAAGTCCGGCCAGCCATGCAGACAGTGAAGGGTCT-CATGCTCGATGGTA    223

BSNT_03172___    214 AAGAACGGAGGGATCCTCTCTTTATTTCTTGCTTCTATCCTGATTTCGAT    263
                     |||.||       |..|.||.|||.|.||..||.||||..|.||.|||.|
BPUM_1872___r    224 AAGCAC-------TTTTTTCATTACTACTATCTGCTATTTTAATATCGGT    266

BSNT_03172___    264 CAACTGGTTTGTATACATATGGGCTGTAAACCATGGCTTTTTGCTTGAGG    313
                     .|||||||.|||.|||||.|||||.||.||||||....||.||||.||.|
BPUM_1872___r    267 TAACTGGTATGTGTACATTTGGGCAGTCAACCATCATCTTATGCTAGAAG    316

BSNT_03172___    314 CTAGTCTTGGCTATTACATTAATCCGCTTGTATCAGTGCTCCTTGGGATT    363
                     |||||.|.||.|||||.||||||||||||||.||.||..|.||.|||||.
BPUM_1872___r    317 CTAGTTTAGGGTATTATATTAATCCGCTTGTCTCTGTTTTACTAGGGATC    366

BSNT_03172___    364 TTATTTTTAAAGGAAAAACTGAATCGCCTGCAATTA------GTGGCCGT    407
                     .|.||.||.|||||....||.|||      .|||||      .|.||..|
BPUM_1872___r    367 ATTTTCTTGAAGGAGCGGCTCAAT------AAATTACAAACCATTGCGAT    410

BSNT_03172___    408 TTCGATTGCGGCAGCCGGTGTCATCATCTCGGCGTTCCAATACGGCTCCA    457
                     ||..|||||.|||||.||.||.||..|.||..||.|.||.|||||.||..
BPUM_1872___r    411 TTTAATTGCCGCAGCAGGAGTGATTCTTTCTACGATTCAGTACGGTTCAT    460

BSNT_03172___    458 TTCCTTATGTTGCGCTTCTCCTCGCATTCAGCTTTGGGCTGTACGGGTTA    507
                     |||||..||||||..|..|.||.||.||.|||||.||..|.||.||.||.
BPUM_1872___r    461 TTCCTGTTGTTGCCATATTACTTGCCTTTAGCTTCGGTTTTTATGGATTG    510

BSNT_03172___    508 AGCAAAAAAAGAACAAGCCTGCCGAGCGCCATCGGTTTAACGCTGGAAAC    557
                     |..||||||||||..|||.|..||||.|||||.|||||.||..|.|||||
BPUM_1872___r    511 ATTAAAAAAAGAATGAGCTTTACGAGTGCCATTGGTTTGACCATTGAAAC    560

BSNT_03172___    558 ATTCATGATTATGCCGATT---------GCA----TTAGGGTAT-----T    589
                                 ||.|.||         |||    ||   ||||     |
BPUM_1872___r    561 ------------GCTGCTTCTCGCACCGGCAGCTCTT---GTATACTTAT    595

BSNT_03172___    590 TGCTGTTC---AGCGGACATGTTCAGCCAGCGGGTG-CA--GAA------    627
                     ||.|.|||   |..|.||.|||          .||| ||  |||      
BPUM_1872___r    596 TGTTCTTCTTAAAAGAACCTGT----------CGTGACAATGAATCCTAA    635

BSNT_03172___    628 -AG---CGGAGGGACGTGG-CTGCTTCTCTTTTTGGCCGGTGTGTTTACG    672
                      ||   ||||..| |.||| |||   .|.||.||.||.||.||.|||||.
BPUM_1872___r    636 CAGCTTCGGATCG-CTTGGTCTG---TTATTCTTCGCAGGGGTCTTTACT    681

BSNT_03172___    673 GCTTTGCCGC-TCTTATTGTTTGCGGAAGGAGCGAAACGGCTGCCACTGT    721
                     ||..|.|||| |||| ||.||..|.|||||.||.|||.|..|.||.||.|
BPUM_1872___r    682 GCGGTACCGCTTCTT-TTATTCTCTGAAGGGGCAAAAAGAATTCCTCTTT    730

BSNT_03172___    722 ATCAAGTCGGTATCTTACAATATATTGCGCCGACCATTACCCTTCTGATC    771
                     |||||||.|||||.||.|||||.|||||.||.||.|||||.||..|..|.
BPUM_1872___r    731 ATCAAGTGGGTATTTTGCAATACATTGCACCAACGATTACGCTGTTTTTG    780

BSNT_03172___    772 GGGCTGTTTGTTTACCATGAGCCATT----TTCAAGCTCGAAGGCTT-TT    816
                     |||.|||||||.||.||.||| ||||    ||| ||||..||   || |.
BPUM_1872___r    781 GGGTTGTTTGTGTATCACGAG-CATTTATCTTC-AGCTAAAA---TTGTG    825

BSNT_03172___    817 ACATTCAGCTGTATATGGGCTGCGCTGATCTTGTTTACGTTTTCACAAGT    866
                     ||.||....|||||.||||..|||.|..|.|||||||||...||.||| |
BPUM_1872___r    826 ACGTTTCTTTGTATCTGGGTGGCGATTTTATTGTTTACGACCTCTCAA-T    874

BSNT_03172___    867 GAAG--TGGAAACGGGCGTCAAAAAGC-------CATTGA    897
                     .|.|  ||.|||        |||.|||       ||||.|
BPUM_1872___r    875 TACGCATGAAAA--------AAACAGCGAATTCTCATTAA    906


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