Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03182 and BPUM_1876

See Amino acid alignment / Visit BSNT_03182 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:40
# Commandline: needle
#    -asequence dna-align/BSNT_03182___yodC.1.24716.seq
#    -bsequence dna-align/BPUM_1876.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03182___yodC-BPUM_1876.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03182___yodC-BPUM_1876.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03182___yodC
# 2: BPUM_1876
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 633
# Identity:     440/633 (69.5%)
# Similarity:   440/633 (69.5%)
# Gaps:          39/633 ( 6.2%)
# Score: 1422.0
# 
#
#=======================================

BSNT_03182___      1 ATGACG---------AATACTCTGGATGTTTTAAAAGCACGTGCATCTGT     41
                     |||.||         ||.||..|.||..||||||||..|.|.||.||.||
BPUM_1876          1 ATGGCGACTGATCAAAAAACGATTGACATTTTAAAACAAAGAGCTTCAGT     50

BSNT_03182___     42 AAAGGAATATGATACAA---ATGCCCCGATCTCTAAGGAGGAGCTGACTG     88
                     |||.||.||||||||||   |||   ..||..|.||.||.|||||.||.|
BPUM_1876         51 AAAAGAGTATGATACAACTCATG---AAATGACAAAAGAAGAGCTAACAG     97

BSNT_03182___     89 AGCTATTAGACTTTGCCGCTAAAGCGCCTTCTGCTTGGAACCTTCAGCAT    138
                     |||||.|.||..|..|..|.|||||.||.|||||.|||||||||||||||
BPUM_1876         98 AGCTACTTGATATCACAACAAAAGCTCCATCTGCGTGGAACCTTCAGCAT    147

BSNT_03182___    139 TGGCATTTTACAGTATTCCACAGCGATGAATCAAAAGCGGAGCTTCTTCC    188
                     |||||||||||.||.||||||||.|.||||||.||||||.||.|.|||||
BPUM_1876        148 TGGCATTTTACTGTGTTCCACAGTGCTGAATCCAAAGCGAAGTTACTTCC    197

BSNT_03182___    189 TGTAGCGTATAATCAAAAACAAATCGTTGAGTCTTCTGCTGTTGTTGCCA    238
                     ..|.||.|||||.|||||.||||||....|..|.||.||||||.||||..
BPUM_1876        198 AATCGCTTATAACCAAAAGCAAATCTCACAAGCATCAGCTGTTATTGCTG    247

BSNT_03182___    239 TTTTAGGCGAT-TTAAAGGCAAATGAAAACGGTGAAGAAGTTTATGCCGA    287
                     |..||||.||| ||.|| ||.|||.||||.||.|||.||.|.||    .|
BPUM_1876        248 TACTAGGTGATCTTGAA-GCCAATCAAAATGGCGAAAAAATCTA----CA    292

BSNT_03182___    288 ATTAGCAAGC----CAAGGCTATATTACGGATGAAATCAAACAAACATTG    333
                     .|.|||..||    |||||.|..|||||.||.||.||||||.||||||||
BPUM_1876        293 GTGAGCTGGCAGAACAAGGGTTCATTACTGAAGACATCAAAGAAACATTG    342

BSNT_03182___    334 CTCGGC-CAAATCAACGGTGCTTACCAAAGCGAGCAATTCGCACGTGATT    382
                     .| |.| ||||||||.||.||.||.|||||||||||.|..||||||||..
BPUM_1876        343 AT-GACTCAAATCAATGGCGCATATCAAAGCGAGCAGTATGCACGTGAAG    391

BSNT_03182___    383 CCGCTTTCTTAAATGCTTCTTTAGCTGCTATGCAGCTTATGATTGCCGCA    432
                     |.||.|..|.|||||||||.||||||||||||||..|.||||||||.|||
BPUM_1876        392 CTGCGTATTCAAATGCTTCATTAGCTGCTATGCAATTAATGATTGCTGCA    441

BSNT_03182___    433 AAAGCAAAAGGTTATGACACTTGCGCAATTGGCGGATTTAACAAAGAGCA    482
                     |||||||..||.|||||.||.||.|||||.||.||.||.|..|||||  |
BPUM_1876        442 AAAGCAATGGGCTATGATACATGTGCAATGGGTGGTTTCAGTAAAGA--A    489

BSNT_03182___    483 G--TTC--CAAAAGCAATTTGATATCAGTGAGCGCTATGTTCCGGTTATG    528
                     |  |||  ||||  .||||..||.|.||.|..||.||.|..||.||.|||
BPUM_1876        490 GCCTTCATCAAA--GAATTCAATGTAAGCGGACGTTACGAGCCAGTCATG    537

BSNT_03182___    529 CTAATTTCAATCGGCAAAGCAGTGAAGCCTGCGCATCAAAGCAACCGTCT    578
                     .|.||||||.|.||.|||||||.|||....||.|||.|||||||||||.|
BPUM_1876        538 TTGATTTCAGTTGGTAAAGCAGCGAAAGAAGCTCATAAAAGCAACCGTTT    587

BSNT_03182___    579 GCCGCTTTC--AAAAGTATCAACTTGGCTGTAA    609
                       ||...||  |.|||||||...||..||.|||
BPUM_1876        588 --CGACATCGAAGAAGTATCTGATTTTCTTTAA    618


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.