Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03192 and BPUM_1878
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_03192___yodF.1.24716.seq
# -bsequence dna-align/BPUM_1878___yodF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03192___yodF-BPUM_1878___yodF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03192___yodF-BPUM_1878___yodF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03192___yodF
# 2: BPUM_1878___yodF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1542
# Identity: 1114/1542 (72.2%)
# Similarity: 1114/1542 (72.2%)
# Gaps: 99/1542 ( 6.4%)
# Score: 3834.0
#
#
#=======================================
BSNT_03192___ 1 ATGCAAGGGAATCTGACTGCACTTCTCATTACTGCTATTATTGTTTTAAC 50
||||||||.|||.||||.||..|..|.|||||.||.|.|||..||||.|.
BPUM_1878___y 1 ATGCAAGGAAATTTGACAGCTTTATTGATTACAGCAAGTATCATTTTCAT 50
BSNT_03192___ 51 CGTTGTCTGT-ATCGGCTTTCTCGCCGGAAGAGACAAATCCTCACGCAC- 98
|||.|| .|| ||.||.|||..|||.||..|.||.|||||.|| |..||
BPUM_1878___y 51 CGTGGT-GGTCATTGGATTTGCCGCTGGCCGTGATAAATCATC-CAGACA 98
BSNT_03192___ 99 TTCTGTGGAAGAATGGTCTGTCGGCGGCA-GACGTTTCGGCGGTCTTCTC 147
.||.||.||.|||||||||||||||||.| ||..||| |||||.||.|||
BPUM_1878___y 99 ATCAGTAGAGGAATGGTCTGTCGGCGGGAGGAAATTT-GGCGGGCTGCTC 147
BSNT_03192___ 148 GTCTGGTTTTTAGTAGGCGCTGACCTTTAT--ACGGCCTATACTTTCTTA 195
||||||||..|.||.|||||.|| ||||| ||.||.|||||.||.|||
BPUM_1878___y 148 GTCTGGTTCCTTGTTGGCGCCGA--TTTATACACAGCTTATACCTTTTTA 195
BSNT_03192___ 196 GGGTTGACCAGTACTGCTTTTACAGGCGGAAGTGTTGCATTTTTCGCCAT 245
|||.|.||.|||||.||.|.|||||..||||||||.||.||||||||.||
BPUM_1878___y 196 GGGCTCACTAGTACAGCCTATACAGCTGGAAGTGTCGCTTTTTTCGCTAT 245
BSNT_03192___ 246 TCCTTATTCTGTGTTGGCCTACTTTATCGCCTACTTCTTCTTGCCAAAAC 295
|||.|||||.||..|.||.||.|||||.||.||.||||||||.||.||.|
BPUM_1878___y 246 TCCCTATTCAGTACTAGCGTATTTTATTGCTTATTTCTTCTTACCTAAGC 295
BSNT_03192___ 296 TTTGGAATGTTGCGAAAATTCATAAACTAACAACACTCGCGGATTATGCC 345
|.||||..||||||||||.|||.||.||.|||||.||.||.||.|||||.
BPUM_1878___y 296 TATGGACGGTTGCGAAAAATCACAACCTCACAACGCTTGCTGACTATGCA 345
BSNT_03192___ 346 CGGGAACGTTTTAACAGTAAGCTTTTGGCAAGCCTCGTTGCCATCGTCGG 395
||.||.||.|||.||||.|||||.||..|.||.|||.||||.||..|.||
BPUM_1878___y 346 CGTGAGCGCTTTGACAGCAAGCTGTTATCCAGTCTCATTGCGATTATTGG 395
BSNT_03192___ 396 GGTACTCATGCTTATTCCGTACATATGCCTTCAGCTGAGCGGCATTCAAG 445
.|||||.|||||.|||||.||.||.||.|||||.||.|||||.|||||||
BPUM_1878___y 396 AGTACTTATGCTCATTCCTTATATTTGTCTTCAACTAAGCGGAATTCAAG 445
BSNT_03192___ 446 ACACGCTTCA-GGTTGCCGGCACTGGCTATATTAACGTAAAATTC-GTTG 493
|.||| ||.| .||.||.||.|||.|.||||||||.|| .|||.| ||||
BPUM_1878___y 446 ATACG-TTAACTGTCGCTGGAACTAGTTATATTAATGT-GAATGCAGTTG 493
BSNT_03192___ 494 TGATCATTTCATTTATTCTTGTTGCTCTTTACACATTCTTCAGCGGGATT 543
|.||.||||||||||||.|.|||||.|||||.|||||.|||||||||||.
BPUM_1878___y 494 TTATTATTTCATTTATTTTAGTTGCACTTTATACATTTTTCAGCGGGATA 543
BSNT_03192___ 544 AAAGGGCCCACATATACAGCCATCATTAAGGACATTTTAGTATGGGTCAT 593
|||||.||.|||||||||||.||.||.|||||.|||.|.||.||||||||
BPUM_1878___y 544 AAAGGTCCTACATATACAGCGATTATCAAGGATATTCTCGTTTGGGTCAT 593
BSNT_03192___ 594 TATGCTGTTTATGGTGGTGTCCCTCCCTCTCATTCATTTTAACGGCTGGA 643
.|||||||||||||||||.||.||.||..|||||||||||||||||||||
BPUM_1878___y 594 CATGCTGTTTATGGTGGTTTCACTACCAATCATTCATTTTAACGGCTGGA 643
BSNT_03192___ 644 CGCCAATGATTGACACGTTAGTGAAGGAAGCACCGCAAATGCTGACGATA 693
|.||.|||||..|.|||||||.|||||||||.||.||..|.|||||.||.
BPUM_1878___y 644 CTCCGATGATGAATACGTTAGCGAAGGAAGCGCCACAGCTTCTGACAATT 693
BSNT_03192___ 694 C----CGGCAGAAGGGCCAAAAGGCATTCCTTGGTTTATCACAGCATCTA 739
| |||| ||.||.|||||.|||...|||||.||.||.||.||..
BPUM_1878___y 694 CCTGACGGC----GGCCCTAAAGGTATTTTATGGTTCATTACCGCTTCAG 739
BSNT_03192___ 740 TTGTTTCCGCTCTGGCACTTTTTATGTGGGCACACGCCGCTACAGGAGTT 789
..|||||.||.||.||..|.||||||||||||||.||.||.|||||.|||
BPUM_1878___y 740 GCGTTTCTGCCCTTGCTTTATTTATGTGGGCACATGCGGCAACAGGGGTT 789
BSNT_03192___ 790 TTTACAGCGAAAAGCGCCGATGCAGTAAGAAAAAACAGCATGTTTTTACC 839
||.|||||.|||||.||.|||||..|..|.||||||||.||||||||.||
BPUM_1878___y 790 TTCACAGCCAAAAGTGCAGATGCTATCCGTAAAAACAGTATGTTTTTGCC 839
BSNT_03192___ 840 CCTTTACAATATTGTGTTAATTTTGGTCATTTTTCTTGGCTTTATCGCCT 889
.|||||.||.|||||.||.|||||||||||.||.|||||.|||||.|||
BPUM_1878___y 840 TCTTTATAACATTGTATTGATTTTGGTCATCTTCCTTGGATTTATTGCC- 888
BSNT_03192___ 890 TTCTTA-TCCTGCCGGAAGATACAAATCCAAGACTCGCGCTGCTGCATTT 938
|||||| ||.|.||.||||||||.|||||||||.|.||.||.||.|||||
BPUM_1878___y 889 TTCTTAGTCTTACCAGAAGATACGAATCCAAGATTTGCACTTCTTCATTT 938
BSNT_03192___ 939 GATTCAAACATCTTACGGCGGCGTGGCACAAGGTTTTGCATATGCCACTA 988
.||||||||.||.||.|||||||||...||.|||.||||.|||.|.||.|
BPUM_1878___y 939 AATTCAAACGTCATATGGCGGCGTGATGCAGGGTCTTGCTTATTCAACGA 988
BSNT_03192___ 989 TCGCTCTTGCTTCATTAATACCTTGTTCCATTATGGCAATCGGCGCATCG 1038
|.||.||||||||..|.||.||.||.||.||.|||||.||.||.||||||
BPUM_1878___y 989 TTGCACTTGCTTCCCTCATTCCATGCTCGATCATGGCCATTGGTGCATCG 1038
BSNT_03192___ 1039 AATTTATTCGCCAACAACCTATACCGGGATTTGATTCATCCGAATGTGTC 1088
||||||||.|||||.||..||||.||.|||||.||||||||||||||.||
BPUM_1878___y 1039 AATTTATTTGCCAATAATTTATATCGTGATTTAATTCATCCGAATGTATC 1088
BSNT_03192___ 1089 GC--AAAGCAAGCTTACTCTTG-TCACACGTTCAATGGTCTTTGTTGTCA 1135
.| ||| ||..|.|| |.|| ||||.|||||||||||.|||.|.||||
BPUM_1878___y 1089 ACCTAAA--AAATTGAC-CATGATCACTCGTTCAATGGTATTTATCGTCA 1135
BSNT_03192___ 1136 TCGGTCTCGCGCTGCTGTTTGGAATGCTGTTCCCGACTGC-CTTAGTGAC 1184
|.||.||.||.||.||.||.||||||||.|||||.||.|| ||| ||.||
BPUM_1878___y 1136 TTGGGCTGGCTCTACTATTCGGAATGCTCTTCCCAACAGCACTT-GTAAC 1184
BSNT_03192___ 1185 ACTCCAGCT-ATTAGGTGTATCCGGCATGGTGCAAATCTTCCCGGCGATT 1233
.||.||||| ||| |||||.||.||.|||||.|||||||||||.||.|||
BPUM_1878___y 1185 GCTTCAGCTCATT-GGTGTTTCAGGAATGGTTCAAATCTTCCCTGCCATT 1233
BSNT_03192___ 1234 GCTGTCAGTCTATTCTGGAAGCATCAAACGAAAGAAGCGACAGTTATTGG 1283
||..||||..|.||||||||..|.|||.|||.||||||.||..||...||
BPUM_1878___y 1234 GCGATCAGCTTGTTCTGGAAAAAACAATCGAGAGAAGCAACGATTGCAGG 1283
BSNT_03192___ 1284 ATTATTAGTCGGCCTTGCGGTTACGTTTATTGTGTATACCACTCAAT-CC 1332
||||.|.||.|||.|....||.||.|||| ||..|||| .|
BPUM_1878___y 1284 ATTAGTTGTTGGCATCATCGTCACCTTTA----------CAGCCAATATC 1323
BSNT_03192___ 1333 GCACA---------TGGCATTTATGAAGGA-TTCTGGGGATTGGC-CGCC 1371
.|||| |||..||||||||||| ||||.|| ||..| .||.
BPUM_1878___y 1324 TCACAAGTCACGTTTGGTCTTTATGAAGGATTTCTTGG--TTTACTAGCA 1371
BSNT_03192___ 1372 AACATGATCGCTGTGGTTATCC------TGAATCCGCTGTTCGTTAAAAA 1415
|| ||.||||||.|||| ||||||| .|||.||.||||
BPUM_1878___y 1372 AA------CGTTGTGGTCATCCTGATTTTGAATCC---ATTCTTTCAAAA 1412
BSNT_03192___ 1416 CGCGGG----ATCCAATCCTGTCATTGAA-GGTTTATTTGGCAAAAAACA 1460
|..|| |.|||||.|||||| |||| |.|.||||||..|||.|.||
BPUM_1878___y 1413 -GAAGGTCACAACCAATTCTGTCA-TGAATGATCTATTTGAAAAAGATCA 1460
BSNT_03192___ 1461 AGACGCTAATCCAAATCA-----------AAAGGGTGCATAA 1491
.|| ||||.|| |||.|..|.||.|
BPUM_1878___y 1461 CGA--------CAAAACAGCGACGACCGTAAACGAAGTATGA 1494
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