Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02448 and BPUM_1879

See Amino acid alignment / Visit BSNT_02448 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:55
# Commandline: needle
#    -asequence dna-align/BSNT_02448___yktD.1.24716.seq
#    -bsequence dna-align/BPUM_1879.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02448___yktD-BPUM_1879.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02448___yktD-BPUM_1879.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02448___yktD
# 2: BPUM_1879
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 946
# Identity:     657/946 (69.5%)
# Similarity:   657/946 (69.5%)
# Gaps:          56/946 ( 5.9%)
# Score: 2215.0
# 
#
#=======================================

BSNT_02448___      1 ATGAGGAAAAATGAGTCCAGCTTAACGTCTCTAATTTCAGCTTTTGCCCG     50
                     ||||.|||||||||.||.||..|.||.||..||||.||.|||||||||.|
BPUM_1879          1 ATGAAGAAAAATGAATCAAGTGTGACTTCGTTAATATCGGCTTTTGCCAG     50

BSNT_02448___     51 TGCATATCACAGCCGATATGACACACCTCTTATTTTTGATGATTTTATCG    100
                     ..|.|||||.||.|.||.|||.||.|||...||.|||.||||||.|.|.|
BPUM_1879         51 ATCCTATCATAGTCAATTTGATACCCCTAAAATCTTTAATGATTATTTAG    100

BSNT_02448___    101 CAAAAGATCTCATTAACGAAAAAGAGTTTATCGACATCAGTAAAAATATG    150
                     |.|||||..|||||...||||||||.||.|..||.||||...||||||||
BPUM_1879        101 CCAAAGAATTCATTTCGGAAAAAGAATTCACTGAAATCAAAGAAAATATG    150

BSNT_02448___    151 ATTCAAGGAATATCGTTTTTCAACAAAGAGATCGCCGAACGTCTTCA-AA    199
                     .|.|||||.|||...||.|||||||||||.|||||         .|| ||
BPUM_1879        151 GTCCAAGGCATACACTTCTTCAACAAAGATATCGC---------ACAGAA    191

BSNT_02448___    200 AT--------GATCCTGAAAAAATATTAAAATGGGTTGCACAAATCCAGC    241
                     ||        .||.|.|||.||||||||||||||.||.|||||.||||.|
BPUM_1879        192 ATTTGAGGGAAATACAGAAGAAATATTAAAATGGATTACACAAGTCCAAC    241

BSNT_02448___    242 TGTCTCCCACGCCCCTAG-CACGTGCTTCTTATTGTGAAAAAGTCTTGCA    290
                     |.||| |||..|.|||.| ||||.|||.|.||||||||||||.|.||.|.
BPUM_1879        242 TTTCT-CCAATCACCTTGTCACGAGCTGCGTATTGTGAAAAAATATTACT    290

BSNT_02448___    291 CAACGAATTAATGCTGGGAGCAAAACAGTATGTCATTCTTGGAGCGGGGC    340
                     ..|.||..||..|||.|||..||.|||.||.|||.|.|||||.||.||..
BPUM_1879        291 TCATGAGGTAGCGCTAGGATTAAGACAATACGTCGTACTTGGTGCTGGAT    340

BSNT_02448___    341 TGGATACTTTCTGCTTTCGGCATCCAGAATTAGAAAACAGCTTACAGGTT    390
                     |.||||||||..|.|||||.|||||||||||.||||||||||||.|..|.
BPUM_1879        341 TAGATACTTTTAGTTTTCGACATCCAGAATTGGAAAACAGCTTAGAAATA    390

BSNT_02448___    391 TTCGAGGTTGACCATCCGGCTACACAGCAATTCAAAAAAAATAAGCTGAA    440
                     |||||..||||.|||||.|||||||||.||||.|||||..|.|.|.||.|
BPUM_1879        391 TTCGAAATTGATCATCCCGCTACACAGGAATTTAAAAAGCAAAGGTTGGA    440

BSNT_02448___    441 GGATGC-AAATCTGACAATTCCGGGTCATCTTCATTTTGTTCCTATGGAT    489
                     .||.|| |||| |.|.|||.||..||.|||||||||||.||.|||||||.
BPUM_1879        441 CGAGGCTAAAT-TAAAAATCCCAAGTAATCTTCATTTTATTTCTATGGAC    489

BSNT_02448___    490 TTCACCAAAACGTTTTCATATGATCCTCTTTTAGATGAAGGATTTAAGAA    539
                     ||||||||||..||.||.|||.|....||...|.||.||||||||  ||.
BPUM_1879        490 TTCACCAAAAATTTGTCCTATCAAAACCTAAAAAATAAAGGATTT--GAT    537

BSNT_02448___    540 CACAAAA--ACATTCTTCAGCCTTCTCGGAGTGTCTTATTATGTAACACA    587
                     |||||||  ||.||.||.||.|||.|.||.||.|||||.|||.||||..|
BPUM_1879        538 CACAAAAAGACGTTTTTTAGTCTTTTAGGTGTTTCTTACTATTTAACGAA    587

BSNT_02448___    588 GGAAGAAAATGCAAGCTTGATAAGCAATTTATTTTCTCATGTCCCGCCTG    637
                     .||.|||..|.|||||||.|||....|||||||..|..|.||.||..|.|
BPUM_1879        588 AGAGGAAGTTTCAAGCTTAATAGATGATTTATTCACCAAGGTTCCATCAG    637

BSNT_02448___    638 GAAGCTCTATTGTTTTTGATTATGCGGACGAAACACTTTTTACAGCAAAA    687
                     ||||.||.||.||||||||||||||.|||||||..||.||...||.||||
BPUM_1879        638 GAAGTTCGATCGTTTTTGATTATGCAGACGAAAATCTATTCGAAGAAAAA    687

BSNT_02448___    688 GGGACGTCGAATCGAGTTGAACATATGGTGAAGATGGCTGCCGCAAGCGG    737
                     ||.|..||.|||.||||||||.||||||||||.||||||.|...|.|.||
BPUM_1879        688 GGAATCTCTAATAGAGTTGAAAATATGGTGAAAATGGCTTCAATAGGAGG    737

BSNT_02448___    738 GGAACCGATGAAATCATGTTT----CACTTATCAAGAGATTGAACATCTG    783
                     .||||||||||||||||||||    .||||    .||.||.|||.|..||
BPUM_1879        738 AGAACCGATGAAATCATGTTTTTCGTACTT----TGAAATCGAAAAAATG    783

BSNT_02448___    784 TTAGAGTCATCTGGTTTACTGATCTATGAACATCTATCACCAGACGACAT    833
                     |||||...|||.|.||||||.||.|||||||||.|||||||.||..|..|
BPUM_1879        784 TTAGAAAAATCAGATTTACTTATTTATGAACATTTATCACCTGAAAAAGT    833

BSNT_02448___    834 CAATGACCTTTTCTTTAGTAATCGAAAAGACAATTTGTCAGCGTTTGAAA    883
                     .|||||.||.|..||||..|||.||.||||..|..|||||||.|||||.|
BPUM_1879        834 GAATGAACTGTATTTTAACAATAGAGAAGATGACCTGTCAGCTTTTGAGA    883

BSNT_02448___    884 CGATTCATTATATTCATGCGGTCACTAGTGTTGCATAA--------    921
                     |.||||||||.||||||||              .||||        
BPUM_1879        884 CCATTCATTACATTCATGC--------------TATAAAAAAATAA    915


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