Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03196 and BPUM_1881
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_03196___yodH.1.24716.seq
# -bsequence dna-align/BPUM_1881.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03196___yodH-BPUM_1881.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03196___yodH-BPUM_1881.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03196___yodH
# 2: BPUM_1881
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 813
# Identity: 441/813 (54.2%)
# Similarity: 441/813 (54.2%)
# Gaps: 225/813 (27.7%)
# Score: 1039.0
#
#
#=======================================
BSNT_03196___ 1 TTGAGCCGA-TATTTAGAAATGCTGTCCTTATTCGGTGTCGCAGGGGCGC 49
.|||| .|| |||.||||||||||..|||..||.||.||..|..|.||.|
BPUM_1881 1 ATGAG-TGATTATGTAGAAATGCTTGCCTATTTTGGCGTATCTAGTGCCC 49
BSNT_03196___ 50 ACCCAGGCGGACTGGCTTTTTCAAAAGCGGT-CTTG------CAAAAGGC 92
|.||.||.|||.|.|...|..|||||.||.| |||| .|||| .
BPUM_1881 50 ATCCTGGTGGAATAGAGCTAACAAAAACGATGCTTGAGCATATAAAA--T 97
BSNT_03196___ 93 TG-CACCCTCTCCGAATCAGCCG-ATTCTTGATGCCGGATGCGGAACAGG 140
|| ||| |.||..|| || ||.||.|||||.|||||||||||.||
BPUM_1881 98 TGACAC-----CAGAGGCA--CGTATACTGGATGCAGGATGCGGAACTGG 140
BSNT_03196___ 141 ACAAACGGCGGCTTATTTAGGACAT-TTGCTGTATCCTGTAACAGTCG-T 188
||||||||||||.||||||||..|| |||.| ||||..|| |.||.|| |
BPUM_1881 141 ACAAACGGCGGCATATTTAGGCAATATTGGT-TATCAGGT-AGAGGCGAT 188
BSNT_03196___ 189 TGATAAAGATCCTATTATGCTTGAGAAAGCGAAAAAAAGATTTG--CGAA 236
|||||.|.|.|||.|.|||.||||.|||||.||.....|||||| |||
BPUM_1881 189 TGATACACACCCTTTGATGATTGAAAAAGCCAATCTGCGATTTGAACGA- 237
BSNT_03196___ 237 TGAAGGGCTTGCC-ATCCCTGCATATCAGGCGGAGCTGGAACATCTCCCG 285
||||..| |||| ||||..||||..||.||...|.|.|||||.||.||.
BPUM_1881 238 -GAAGAAC-TGCCGATCCGCGCATTGCAAGCATCGATCGAACAGCTGCCA 285
BSNT_03196___ 286 TTT-----------------TCTTCTGAGTCCTTTTCCTGTGTCCTGTCA 318
||| |||||||| |||
BPUM_1881 286 TTTCCAGATGAAGTGTTCAATCTTCTGA-------------------TCA 316
BSNT_03196___ 319 --GAATCGGTCCTCAGTTTTTCACG--CCTGACATCCTCTCTTCAAGAAA 364
|||||.||..|.||.||| ||| |||..||.|..|.|||...||.|
BPUM_1881 317 GTGAATCTGTTTTAAGCTTT--ACGAACCTTCCAGCAGCACTTGCTGAGA 364
BSNT_03196___ 365 TTTCAAGAGTTT---------------TAAAACCCGGCGGGATGCTGATT 399
||||..||.| |.||| |||||
BPUM_1881 365 --TCAAACGTGTGCTTGCTCCTGGAAGTCAAA-------------TGATT 399
BSNT_03196___ 400 GGTATCGAAGCTGCTTTAAAAAAACCGATGC-CCCCT---GCAGAAAAGA 445
|..|..|||||.|..|||||| || ||||| ||.| |||.
BPUM_1881 400 GCAAATGAAGCAGTATTAAAA--------GCACCCCTTACGCCG--AAGG 439
BSNT_03196___ 446 AGCAAATGATG-----------GATTTTTACGGATTT-----ACTTGCTT 479
||| .|| |||||||||||.||| ||| |||
BPUM_1881 440 AGC-----TTGCGACCGTTCGAGATTTTTACGGGTTTCACGCACT--CTT 482
BSNT_03196___ 480 ---ACATGAAGAAAGCGAATGGCATAAACTCCTAAGATCCTATGGCTTTC 526
|..|||| ||.|||||..|.|..||||.|.|....||.||||
BPUM_1881 483 TTCAGTTGAA------GATTGGCAGGAGCAGCTAAAAGCAGCAGGATTTC 526
BSNT_03196___ 527 AAAAAACAGAAGCGATGACACTTC------TTCCGGAAGACATGGAATTT 570
||.| ||.|..|| ||| ||...|||.||||||.|
BPUM_1881 527 AAGA--------CGTTCGCA-TTCTCTCATTTGATGAACACATGGTA--- 564
BSNT_03196___ 571 GAACCAA-------CCACAGAAATGGATTTATCGCAAACGATTG-----A 608
||| |.|||||||||||.||||| || |
BPUM_1881 565 ----CAAGAAGAGCCGACAGAAATGGAATTATC---------TGAGTATA 601
BSNT_03196___ 609 TCCC-----ATCTATTACGATACGCTTCAAACACATTATCAGCTCATGCA 653
|||| .||| ||||||.|||.|.||||||||.||..|.||.||.||
BPUM_1881 602 TCCCGCCTTCTCT-TTACGAAACGATGCAAACACACTACGATCTGATTCA 650
BSNT_03196___ 654 GTTATATAGTGAGTAC-----------ATGGGTCATTGTATTTTTATCGC 692
| |.|.|| |.|...||||.|||||..||
BPUM_1881 651 G---------GCGCACCGAAAGCATCTAAGCCACATTCTATTTGAAT--- 688
BSNT_03196___ 693 GTAC---AAGTAA 702
|||| | |||
BPUM_1881 689 GTACTGTA--TAA 699
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