Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03198 and BPUM_1883

See Amino acid alignment / Visit BSNT_03198 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:41
# Commandline: needle
#    -asequence dna-align/BSNT_03198___yodJ.1.24716.seq
#    -bsequence dna-align/BPUM_1883___yodJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03198___yodJ-BPUM_1883___yodJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03198___yodJ-BPUM_1883___yodJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03198___yodJ
# 2: BPUM_1883___yodJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 888
# Identity:     598/888 (67.3%)
# Similarity:   598/888 (67.3%)
# Gaps:         123/888 (13.9%)
# Score: 1975.5
# 
#
#=======================================

BSNT_03198___      1 ATGA--AAAAGTCCGGTAAATGGTTCTCACTGGCTGCCGCTCTGAGTGT-     47
                     ||||  |||||  |..||||....|||||.|.||..|...|||..||.| 
BPUM_1883___y      1 ATGAAGAAAAG--CTATAAAATACTCTCAATCGCATCGATTCTTGGTTTG     48

BSNT_03198___     48 --AACGGCAATAGTCGGAGCCGGCTGCAGCATGTCGAACGGAGATGCTCA     95
                       |.|.|||.|| |||     ||||||             .||.||||  
BPUM_1883___y     49 ACAGCCGCATTA-TCG-----GGCTGC-------------CAGTTGCT--     77

BSNT_03198___     96 AAAGGATACGAAAACC---ACAGCAGA----AACAAAGCAAACAGAACAA    138
                        ||||...||||.|   |||.|.||    ||||||.||||| ||||||
BPUM_1883___y     78 ---GGATCAAAAAAGCGGTACATCTGAATCGAACAAAACAAAC-GAACAA    123

BSNT_03198___    139 AAAACAGCTGA-------------CAGCAAAAAATCAAACACTCAAAACA    175
                     ||||..||.||             |||| ||||.|||||    |||.|||
BPUM_1883___y    124 AAAAGCGCAGAAAATTCATCTACCCAGC-AAAACTCAAA----CAATACA    168

BSNT_03198___    176 G-TGAGTTTTCATTGG----------------AAAGCCAG----TATTTC    204
                     | .||   |||||..|                ||||  ||    ||||||
BPUM_1883___y    169 GCAGA---TTCATCTGATCAAGAGCTGACGTTAAAG--AGTGAATATTTC    213

BSNT_03198___    205 AATGATATTAAAAAAGTCGATGGT-------CTGGAAACCATTCAAAATC    247
                     |||||.||.||       |.||||       |||.|||||||||||||||
BPUM_1883___y    214 AATGACATCAA-------GGTGGTAAGCGGGCTGAAAACCATTCAAAATC    256

BSNT_03198___    248 CAGAAAATATACTCGCGCTTGTCAATAAACAATATGCACTGCCCGGAAAC    297
                     |.|.|||..|.||.||.||||||||.|||.||||.|||.|.||.||||.|
BPUM_1883___y    257 CTGCAAACGTGCTAGCACTTGTCAACAAAGAATACGCATTACCAGGAACC    306

BSNT_03198___    298 TATGAACCTAGCGATCTTGTCATACCTGATGTAGAGTTTTCTTTTGAAGA    347
                     |||.|||||...|||||.||..||||..|.|||||.||.||||||..|||
BPUM_1883___y    307 TATAAACCTTCTGATCTCGTTGTACCAAAAGTAGAATTCTCTTTTTCAGA    356

BSNT_03198___    348 AAAGATTCAAAAACGTTACATCAGAAAAGAAGCGGCCGACGCATTAAAAA    397
                     ..|.|||.|||||||.||.||..|.||||||||.||.||.|||.|..|.|
BPUM_1883___y    357 GGATATTGAAAAACGATATATTCGTAAAGAAGCAGCAGAAGCACTTGAGA    406

BSNT_03198___    398 CAATGTTCGATGCTGCCAAAAAGGAAGGCTATGAACTGGCAGCTGTCTCA    447
                     ||.|.|||.|.|.|||.||||||.||..||..||.|||||.||.||.||.
BPUM_1883___y    407 CATTATTCAAAGATGCGAAAAAGAAAAACTTCGAGCTGGCTGCCGTATCT    456

BSNT_03198___    448 GGGTACCGTTCGTATGACAGACAGAAAGTCATTTTTGACAATGAAGT-AA    496
                     ||.||.|||||.||||||.|.||.||.|||||||||||.|.|||||| ||
BPUM_1883___y    457 GGCTATCGTTCCTATGACCGTCAAAAGGTCATTTTTGATAGTGAAGTCAA    506

BSNT_03198___    497 GCCTAAAAGGGGAAAAGAAGGCAAAGGAAGCGGTCGC-TTACCCCGGGGA    545
                     | .|||||||..||.|.|||||..|.|||||.||.|| ||| ||.||.||
BPUM_1883___y    507 G-TTAAAAGGCAAAGAAAAGGCGCAAGAAGCAGTAGCATTA-CCAGGCGA    554

BSNT_03198___    546 AAGCGAGCACCAAACAGGCCTTGCGATGGACATTTC--------GAGCCG    587
                     |||.||.||.||||||||||||||||||||||||||        |.||| 
BPUM_1883___y    555 AAGTGAACATCAAACAGGCCTTGCGATGGACATTTCTTCAAAAAGTGCC-    603

BSNT_03198___    588 GAGCAATGGCTTTGAGCTAAATGAAGCGTTCG--GAAGCACGGCAGACGG    635
                            ||||||||..|...||||..|||.|  |||.|||  |.||.||
BPUM_1883___y    604 -------GGCTTTGACATCTCTGAAAAGTTTGGTGAAACAC--CTGATGG    644

BSNT_03198___    636 GAAATGGGTGCAGGACAATGCTTATAAATATGGCTTTATCATTCGCTATC    685
                     .|||||||||....|.||.||.|||||||||||.||||||||||||||||
BPUM_1883___y    645 CAAATGGGTGGCTAAAAACGCCTATAAATATGGTTTTATCATTCGCTATC    694

BSNT_03198___    686 CGAAAAATAAAGAAGATATCACGAAATATGAATATGAGCCATGGCATCTG    735
                     |.|||...|||||||||||.||.|||||||||||||||||.|||||||||
BPUM_1883___y    695 CAAAAGGAAAAGAAGATATTACAAAATATGAATATGAGCCGTGGCATCTG    744

BSNT_03198___    736 CGCTATGTAGGCAAAAAAGCCGCAAAGGTCATCCAAGATAATGATTTAAC    785
                     ||||||||.||.|||.||||||||||.|..||.||.|||.|.||||||||
BPUM_1883___y    745 CGCTATGTTGGAAAAGAAGCCGCAAAAGCGATGCATGATCACGATTTAAC    794

BSNT_03198___    786 GCTAGAAGAGTACTTTGAA-AAAGTGAAGAAAATTTAA    822
                     ..|.||||||||| .|||| |||||.||||||||||||
BPUM_1883___y    795 ATTTGAAGAGTAC-ATGAACAAAGTAAAGAAAATTTAA    831


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03198 and BPUM_1883

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
