Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03215 and BPUM_1892
See
Amino acid alignment /
Visit
BSNT_03215 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:42
# Commandline: needle
# -asequence dna-align/BSNT_03215___kamA.1.24716.seq
# -bsequence dna-align/BPUM_1892___kamA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03215___kamA-BPUM_1892___kamA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03215___kamA-BPUM_1892___kamA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03215___kamA
# 2: BPUM_1892___kamA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity: 1036/1443 (71.8%)
# Similarity: 1036/1443 (71.8%)
# Gaps: 69/1443 ( 4.8%)
# Score: 3605.5
#
#
#=======================================
BSNT_03215___ 1 TTGAA----AAACAAATGGTATAAACCGAAACGGCATTGGAAGGAGATCG 46
.|||| ||||.| |||.|||||..|||.|||||||||||.||.|
BPUM_1892___k 1 ATGAATCAGAAACTA----TATGAACCGGCACGTCATTGGAAGGACATTG 46
BSNT_03215___ 47 AGTTATGGAAGGACGTTCCGGAAGAGAAATGGAACGATTGGCTTTGGCAG 96
||.|.|||||.||.||.||.||.||.|||||||||||.|||.||||||||
BPUM_1892___k 47 AGCTTTGGAAAGATGTACCTGAGGAAAAATGGAACGACTGGATTTGGCAG 96
BSNT_03215___ 97 CTGACACATACTGTAAGAACGTTAGATGATTTAAAGAAAGTCATCAATCT 146
|||||.|||||.||.|.||||.|.||.||||||.|||||.||.|.||..|
BPUM_1892___k 97 CTGACGCATACCGTGAAAACGCTTGAAGATTTAGAGAAAATCGTAAACTT 146
BSNT_03215___ 147 GACTGAGGATGAAGAG-GAAGGCGTCAGAATTTCTACTAAAACGATCCCC 195
.||.||.||.||| || |||||.||.|..|||||.||.|||||.||.||.
BPUM_1892___k 147 AACAGAAGAGGAA-AGAGAAGGGGTGAAGATTTCCACCAAAACCATTCCA 195
BSNT_03215___ 196 TTAAATATTACACCTTACTATGCTTCTTTAATGGACCCCGACAATCCGAG 245
.|.||.||||||||.||||||||.||.||.|||.|.||.|||.||||.||
BPUM_1892___k 196 CTCAACATTACACCCTACTATGCCTCATTGATGAATCCAGACGATCCAAG 245
BSNT_03215___ 246 ATGCCCGGTACGCATGCAGTCTGTGCCGCTTTCTGAAGAAATGCACAAAA 295
|||.||.|||||.|||||.||||||||..||.|||||||..|.||.||||
BPUM_1892___k 246 ATGTCCAGTACGTATGCAATCTGTGCCAATTGCTGAAGAGCTTCATAAAA 295
BSNT_03215___ 296 CAAAATACGATCTGGAAGACCCGCTTCATGAGGATGAAGATTCACCGGTA 345
|||||||.|||||.||||||||..|.||.||.||||||||.|||||.||.
BPUM_1892___k 296 CAAAATATGATCTTGAAGACCCTTTGCACGAAGATGAAGACTCACCTGTC 345
BSNT_03215___ 346 CCCGGTCTGACACACCGCTATCCCGACCGTGTGCTGTTTCTTGTCACGAA 395
||.||..|.||.||.||.||.||.||.||||||||.||||||||.||.||
BPUM_1892___k 346 CCGGGGTTAACGCATCGATACCCAGATCGTGTGCTCTTTCTTGTAACCAA 395
BSNT_03215___ 396 TCAATGTTCTATGTACTGCCGCTACTGCACAAGAAGGCGCTTTTCCGGAC 445
|||.||.||.|||||||||||.||.||.||.|||||.||.|||||.||||
BPUM_1892___k 396 TCAGTGCTCCATGTACTGCCGTTATTGTACGAGAAGACGTTTTTCTGGAC 445
BSNT_03215___ 446 AAATCGGAATGGGCGTCCCAAAAAAACAGCTTGATGCTGCAATTGCTTAT 495
|.|||||.||||||||.||||||||.|||.|.||||||||.||||..|||
BPUM_1892___k 446 AGATCGGTATGGGCGTGCCAAAAAAGCAGTTAGATGCTGCTATTGGATAT 495
BSNT_03215___ 496 ATCCGGGAAACACCCGAAATCCGCGATTGT-TTAATTTCAGGCGGTGATG 544
||..|||||||.||.||..|.||.|| ||| ||||||||.|||||.||||
BPUM_1892___k 496 ATTAGGGAAACGCCTGAGGTGCGGGA-TGTGTTAATTTCCGGCGGAGATG 544
BSNT_03215___ 545 GGCTGCTCATCAACGACCAAATTTTAGAATATATTTTAAAAGAGCTGCGC 594
|.||..|.||||||||.|||.|..|.|||||.|||||.|||.|..|.||
BPUM_1892___k 545 GTCTTTTGATCAACGATCAAGTGCTTGAATACATTTTGAAAAACTTACG- 593
BSNT_03215___ 595 AG-CATTCCGCATCTGGAAGTCATCAGAATCGGAACAAGAGCGCCCGTTG 643
|| |||||||||..|.|||.||||..|.||.||.|||.|.||.||.||.|
BPUM_1892___k 594 AGACATTCCGCACGTTGAAATCATTCGGATAGGTACACGTGCACCGGTCG 643
BSNT_03215___ 644 TCTTTCCGCAGCGCATTACCGATCATCTGTGCGAGATATTGAAAAAATAT 693
||||||||||.||||||||.|||.|.|||||||||||.||||||||||||
BPUM_1892___k 644 TCTTTCCGCAACGCATTACAGATGAGCTGTGCGAGATTTTGAAAAAATAT 693
BSNT_03215___ 694 CATCCGGTCTGGCTGAATACCCATTTTAACACAAGCATCGAAATGACAGA 743
||||||||.|||||.|||||.|||||.||.||||||||.|||||.||..|
BPUM_1892___k 694 CATCCGGTTTGGCTAAATACTCATTTCAATACAAGCATTGAAATTACGAA 743
BSNT_03215___ 744 AGAATCCGTTGAGGCATGTGAAAAGCTGGTGAACGCGGGAGTGCCGGTCG 793
||||.|....||.||.||.|||...||.||.||.||.||.|||||.||.|
BPUM_1892___k 744 AGAAGCGAAAGAAGCGTGCGAACGTCTTGTAAATGCTGGCGTGCCTGTAG 793
BSNT_03215___ 794 GAAATCAGGCTGTCGTATTAGCAGGTATTAATGATTCGGTTCCAATTATG 843
|.||||||||.|||.|..|.|||||.|||||.||....||.||.||||||
BPUM_1892___k 794 GTAATCAGGCCGTCATCCTTGCAGGAATTAACGACAGTGTGCCGATTATG 843
BSNT_03215___ 844 AAAAAGCTCATGCATGACTTGGTAAAAATCAGAGTCCGTCCTTATTATAT 893
||||||||.|||||.||..|.||.|..||..|.|||.|.|||||||||||
BPUM_1892___k 844 AAAAAGCTGATGCACGATCTCGTGATGATACGGGTCAGACCTTATTATAT 893
BSNT_03215___ 894 TTACCAATGTGATCTGTCAGAGGGAATCGGGCATTTCAGAGCTCCTGTTT 943
|||.||.||||||.|.||.|||||.||.||.||.||.|||.|.||.||.|
BPUM_1892___k 894 TTATCAGTGTGATTTATCTGAGGGGATTGGCCACTTTAGAACACCAGTAT 943
BSNT_03215___ 944 CCAAAGGTTTGGAGATCATTGAAGGGCTGAGAGGCCATACCTCAGGCTAT 993
|.||||||.|.||.|||||.|||||..|.|||||.|||||....|||||.
BPUM_1892___k 944 CAAAAGGTCTTGAAATCATCGAAGGCTTAAGAGGACATACGAGCGGCTAC 993
BSNT_03215___ 994 GCGGTTCCTACCTTTGTCGTTGACGCACCAGGCGGAGGAGGTAAAATCGC 1043
||.||.||.|.||||||.||.||.||||||||.||.||.||.||.|||||
BPUM_1892___k 994 GCCGTGCCAAGCTTTGTTGTGGATGCACCAGGAGGCGGGGGAAAGATCGC 1043
BSNT_03215___ 1044 CCTGCAGCCAAACTATGTCCTGTCACAAAGTCCTGACAAAGT-GACCTTA 1092
|.||||||||||.|||.|..|.||.|||||.||||||||||| |.||||
BPUM_1892___k 1044 CTTGCAGCCAAATTATTTATTATCGCAAAGCCCTGACAAAGTCGTCCTT- 1092
BSNT_03215___ 1093 AGAAATTTTGAAGGTGTGATTACGTCATATCCGGAACCAGAGAATTATAT 1142
.|.||||||||||||||.||.||.||.||.||.|||||||||.||||..|
BPUM_1892___k 1093 CGTAATTTTGAAGGTGTCATCACCTCTTACCCTGAACCAGAGCATTACGT 1142
BSNT_03215___ 1143 CCCCAATCAGGCAGACGCCTATTTTGAGTCCGTTTTCCCTGAAACCGCT- 1191
..|....||||||||.||.||||||.| ||||| |
BPUM_1892___k 1143 TGCAGGCCAGGCAGATGCGTATTTTAA------------TGAAA----TT 1176
BSNT_03215___ 1192 ------GACAAAAAGGAGCCG---ATCGGGCTGAGTGCCATTTTTGCTGA 1232
||.|||.|.||.||| ||.||..|.|.|||..|.|||...||
BPUM_1892___k 1177 TATGAAGAGAAACAAGACCCGGCAATTGGTATTACTGCACTATTTCAGGA 1226
BSNT_03215___ 1233 CAAAG---AAGTTTCGTTTACACCTGAAAATGTAGACAGAATCAAAAGGA 1279
..||| || ||||||||.||.||.|||.||..|.|.||.|||.|.|
BPUM_1892___k 1227 TGAAGCGAAA---TCGTTTACGCCAGAGAATTTAAGCCGGATGAAACGAA 1273
BSNT_03215___ 1280 GAGAGGCATACATCGCAAATCCGGAGCATGAAACATTAAAAGATCGGCGT 1329
||||.|||||.....|||||||.||||||||.|||.|.|||.|....|||
BPUM_1892___k 1274 GAGAAGCATATGAAACAAATCCTGAGCATGACACACTCAAAAACAAACGT 1323
BSNT_03215___ 1330 GAGAAAAGGGATCAGCTCAAAGAAAAGAAATTTTTGGCGCAGCAGAAAAA 1379
||.|||.|.|||.|..|.|||||.||.||||.|...|||||||..|||||
BPUM_1892___k 1324 GAAAAACGAGATGAATTAAAAGAGAAAAAATATCAAGCGCAGCTCAAAAA 1373
BSNT_03215___ 1380 ACAGAAAGAGACTG--AATGCGGAGGGGATTCTTCATGA---- 1416
|.|..|| |||| || |||||.|| |
BPUM_1892___k 1374 AGATCAA---ACTGTAAA---GGAGGAGA---------AATAG 1401
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.