Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03226 and BPUM_1894
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:42
# Commandline: needle
# -asequence dna-align/BSNT_03226___cgeD.1.24716.seq
# -bsequence dna-align/BPUM_1894___cgeD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03226___cgeD-BPUM_1894___cgeD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03226___cgeD-BPUM_1894___cgeD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03226___cgeD
# 2: BPUM_1894___cgeD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1532
# Identity: 789/1532 (51.5%)
# Similarity: 789/1532 (51.5%)
# Gaps: 487/1532 (31.8%)
# Score: 1718.0
#
#
#=======================================
BSNT_03226___ 1 ------ATGGGAGAGAAAGTGTCTATTATTTTAACAAGTTACAACAAACC 44
|| ||||||.||..|.|||||||||||.|||||.|||||
BPUM_1894___c 1 ATGATCAT------GAAAGTATCGGTGATTTTAACAAGCTACAATAAACC 44
BSNT_03226___ 45 CGATT--ATTTGCAAAAAGCGATCG------AAAGCG--TGATACAGCAA 84
.|||| ||| ||||| ||||.| ||.|..|.|||
BPUM_1894___c 45 TGATTTCATT----------GATCGTGTGCTAAAGAGTATGGTGGAACAA 84
BSNT_03226___ 85 ACGCATGATC--TTTGGGAGCTTTTTATCATGGATGATCATTCGAATGCA 132
|||.|| || .||||||||||.|.||.|||||||||...| ||
BPUM_1894___c 85 ACGTAT--TCAAATTGGGAGCTTCTCATTATGGATGATGGCT------CA 126
BSNT_03226___ 133 GAA----ACAACTGCG--GTGATTCACAAGTATCTCCACGACCGGCGCAT 176
||| |||.|..|| ..|||.||.|..|||.|..|.||...||||||
BPUM_1894___c 127 GAACAAGACACCATCGAAAAGATCCAGACCTATTTAGAAGATGAGCGCAT 176
BSNT_03226___ 177 TCAATATC-ATAACAGTTTC-------GTGCATCCTGCAGATCGATTAAA 218
|| ||| ||| ||| ||.|||||||| ||
BPUM_1894___c 177 TC---ATCTATA-----TTCACGCACGGTTCATCCTGC----------AA 208
BSNT_03226___ 219 AACAGCT----------CGTTATGC----CACATTAATTAACAGTGCGCT 254
|||.||| ||.||||| |.|||||||.|| |||||
BPUM_1894___c 209 AACGGCTGTTAACCGTACGATATGCGACGCTCATTAATGAA----GCGCT 254
BSNT_03226___ 255 --CCCATTTGCAGAC-GGCGATTACATTTCCTATCTTACTGACGACACTG 301
|.|.|.| .|| ||.||...|||||..|||.|.|||||.||.||.|
BPUM_1894___c 255 AGCTCGTAT---AACAGGTGAGCTCATTTGTTATTTAACTGATGATACCG 301
BSNT_03226___ 302 TTTATCATCCTGAGCG---GCTGAGCCGTATGATGCAAGAGTTTTCA--C 346
|.|||||||..||.|| ||.|| ..|||.||.|.| .|||||| |
BPUM_1894___c 302 TGTATCATCAAGATCGTTTGCAGA---AAATGGTGGATG-TTTTTCAGTC 347
BSNT_03226___ 347 ATAAGCCTGA---AG---------------CGCAGGCGGTCTATTCAAAA 378
.||||||.| || |||||..||||
BPUM_1894___c 348 -GAAGCCTCATATAGATATTGTGTATTCCTCGCAGCGGGTC--------- 387
BSNT_03226___ 379 CAAAAAGTTGTACATG----TAAACGAA--AGGGGAGAGGAAATCTCACA 422
||.|||| |||.| || ||..||||.|| |.|..
BPUM_1894___c 388 ---------GTGCATGTTGATAAGC-AATTAGTCGAGACGA----TGAGC 423
BSNT_03226___ 423 TTTCT-----------ACAGAAATGCCAATGCAGTGCTTGATCAGGCCGC 461
|||.| ||| |||| || |.||.||.||..|
BPUM_1894___c 424 TTTGTGCGTGAAGCAGACA-AAAT----AT-------TGGAGCATGCGTC 461
BSNT_03226___ 462 TTTTCAAGTTGATCATTGCTCCGTTATGCATC----GCCGTTCGTTACTT 507
.||||||||.||||||||.||.||.||||| | |.||| ||.|||
BPUM_1894___c 462 CTTTCAAGTGGATCATTGTTCGGTCATGCA-CAGAAGGCGT---TTGCTT 507
BSNT_03226___ 508 AATCTCATCCACCATAAATTTGGAGGCTACTGGGATGATGATATGAAGCA 557
...|||||.||..|.||||..|||...||.|||||||||||...|||.||
BPUM_1894___c 508 CCGCTCATTCATGAAAAATACGGACAATATTGGGATGATGAGGCGAAACA 557
BSNT_03226___ 558 TTGGAATCATGGCGACGCAATTTTTTGGGCGAGACTCAA-CAACTTTACC 606
.|||.||||||..||..|..||||||||..|||.||.|| ||| |||.|.
BPUM_1894___c 558 CTGGCATCATGCAGATTCTGTTTTTTGGATGAGGCTGAATCAA-TTTGCT 606
BSNT_03226___ 607 CCATTTCTGCCGATAAATGAAGTATTAGACACAACCTATAAAACCCCAGA 656
.|.|||...||..|||..||.||..|.||.|||||.||||||||.||..|
BPUM_1894___c 607 GCGTTTTATCCATTAAGAGATGTGCTTGATACAACGTATAAAACGCCCCA 656
BSNT_03226___ 657 TTCATTTCAAAATGCATATCGGTTTC-----TGCCCGCCGATTTGATTGA 701
|||.|||||..|| |.|.|||| ||||....|||.|.|||||
BPUM_1894___c 657 TTCCTTTCATCAT-----TTGTTTTCGAGTATGCCGTATGATCTCATTGA 701
BSNT_03226___ 702 CGGCTCTTTTGTAAAAGGTTCAGATCAAAATGTGTATTTTTTTGATCAGG 751
||| ||.||| |||..|||.| || |||
BPUM_1894___c 702 CGG----------AACGGT---GATTGAAAAG-----------GA--AGG 725
BSNT_03226___ 752 G--------------TGTAA---GGCATCCTGTTGGA---GAAAAGTG-- 779
| .|.|| ||.|||.|..|.|| ||||.|||
BPUM_1894___c 726 GGACTACTACCAAATCGCAAGCGGGAATCTTCATAGAATTGAAAGGTGCT 775
BSNT_03226___ 780 GGGTTTTTTGTATC----TAAATCGGACTG----TCGCTGTTCCAGACCC 821
|||| .|.| .||||.||..|| ||| .||| ||
BPUM_1894___c 776 GGGT------GAACGAAAAAAATAGGCGTGCCATTCG-GGTT------CC 812
BSNT_03226___ 822 ATATTTAT-------------TCCAATATAGGAT----TGGCAAAATTTT 854
.|..|||| |..||||.|.||| |||||
BPUM_1894___c 813 TTCGTTATGTGCGATGAAATATGAAATAAAAGATATGCTGGCA------- 855
BSNT_03226___ 855 AAACATTCCGAATTATATTTTAGTAAAGGAAGCTGACCATCCTG------ 898
.|.||.|||||||...|.||.|.||.|| |||.||
BPUM_1894___c 856 ----GTACCCAATTATACAGTTGTCACGGCAG------ATCATGGGAAGA 895
BSNT_03226___ 899 CAATATTTTATATCGAAGCTGGAAAAAAAAGGCGAATTGTGGAC--CAGT 946
|..|.|.||||||.||||.|...||||||||||||.||| | ||
BPUM_1894___c 896 CGTTCTATTATATTGAAGATCAGAAAAAAAGGCGATTTG----CTTCA-- 939
BSNT_03226___ 947 ATGCGT----TTCAATTTTATCAATTTCA----AAGAAAAGACATAGTGA 988
|.|||| |.||||.||.|||.||||| ||| ||.||....|
BPUM_1894___c 940 AAGCGTGACGTGCAATATTTTCAGTTTCACTCTAAG----GAGATCTATA 985
BSNT_03226___ 989 CAATTGGAAAAGAA----------------GAGATGGAGACGCTTCCGGA 1022
|.|||..|||.||| .|||||||| ||.|
BPUM_1894___c 986 CGATTTCAAATGAACGCCTTCAGATGTATGAAGATGGAG--GCAT----- 1028
BSNT_03226___ 1023 AGGGCCGCCGATT-ACGTGGAAACGATCT---GAATTGATCAAAAATCCG 1068
|||| |.||| ||| |.||| || |||||
BPUM_1894___c 1029 ---------GATTCAAGTG-------TCTCCAGTATT--TC----ATCCG 1056
BSNT_03226___ 1069 CC-------TGGCCGACGTCTGTTTTTCATCG-AACGCGAGCCGTTTT-- 1108
|| .||| || |||..||.| |||..|||..||.||
BPUM_1894___c 1057 CCAAACAGGAGGC-----TC---TTTAAATGGAAACAAGAGGTGTATTTA 1098
BSNT_03226___ 1109 -TGTTTC--TAAACGGCGTCTTTCACCCGATTAGTGAACAAGTAACAAGG 1155
||.|.| ||.|| ||||..|| .||.|||.|..| |||
BPUM_1894___c 1099 CTGATGCATTATAC-----CTTTTGCC---GTATTGATCCTG-----AGG 1135
BSNT_03226___ 1156 -----AAG---TTT--TTTTTA-CATCAAAAGCC----AATCTCCGCTT- 1189
||| ||| |||||| |||| |||| ||| ||
BPUM_1894___c 1136 TTGTCAAGCGATTTGCTTTTTATCATC---AGCCCATAAAT------TTA 1176
BSNT_03226___ 1190 ---CTTTCCGAAATATTCAGC-AATTTCCAATTGGAAAGCCGTTTTAT-C 1234
|.||||.| |||.|.| .|||||.|...||||||||| .|.|| |
BPUM_1894___c 1177 TACCCTTCCCA---ATTTACCTTATTTCAAGAAGGAAAGCCG-ATCATGC 1222
BSNT_03226___ 1235 CGGTGTA--------CGATGAGATTATAAAGAAATTGAATAT-------- 1268
||.|||| ||.|| .||| ||||..||||
BPUM_1894___c 1223 CGCTGTATATGGAATCGCTG-------CAAG-AATTCGATATGTCTCTTT 1264
BSNT_03226___ 1269 -TGCAACA-----GAGTAA------------- 1281
|..|||| |.|.||
BPUM_1894___c 1265 ATCAAACATCAGGGCGAAAGCACTCCTCATAA 1296
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