Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03229 and BPUM_1896
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_03229___cgeA.1.24716.seq
# -bsequence dna-align/BPUM_1896___cgeA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03229___cgeA-BPUM_1896___cgeA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03229___cgeA-BPUM_1896___cgeA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03229___cgeA
# 2: BPUM_1896___cgeA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 418
# Identity: 230/418 (55.0%)
# Similarity: 230/418 (55.0%)
# Gaps: 122/418 (29.2%)
# Score: 700.0
#
#
#=======================================
BSNT_03229___ 1 -----------------------------------ATGGATAGT------ 9
||..|.|||
BPUM_1896___c 1 ATGAACGACAAGCGTGCCGAATTAAAAAAAGAACTATTTAAAGTGTTTTT 50
BSNT_03229___ 10 --AAC--CTTA----------AAGACTT--GCTTGAAGCTGCCATCGA-- 41
||| |||| ||.|.|| .||||||| |..||
BPUM_1896___c 51 CAAACCACTTACTCGTGCATTAACAGTTAATCTTGAAG-----AAGGAGG 95
BSNT_03229___ 42 ---TCAAAGAGTAG---------ATGA------AAGTGAGATGGTTACGG 73
|||||..|.|| |||| ||||||..||| |.|
BPUM_1896___c 96 AGTTCAAATGGAAGAGAAATTGAATGATTTATTAAGTGAAGTGG---CAG 142
BSNT_03229___ 74 CAGA---ATCTCTTTTAGACCCT------------------TCCCTTCCG 102
|.|| |||.|.||.|||..|| ||.|..||.
BPUM_1896___c 143 CTGAGGCATCACCTTCAGATTCTGCTACAACACTCGATGTATCTCAGCCA 192
BSNT_03229___ 103 GCAAGATGGATTTTTGCCAGAGTTACGCCAGGCAC-GACAATCAGCATTG 151
|||||||||||||||||.|||.||.|.|||||.|| |.| ||.|||||||
BPUM_1896___c 193 GCAAGATGGATTTTTGCAAGACTTTCACCAGGAACTGTC-ATTAGCATTG 241
BSNT_03229___ 152 TAACCGATTCGGGAGACATGATCGGGCCGGTTGTCTTCGTTGCTTTCGAT 201
|.||.|||||.||||||.|.||||||||.|||...|||||..|.||||||
BPUM_1896___c 242 TCACTGATTCAGGAGACTTAATCGGGCCAGTTCAATTCGTATCATTCGAT 291
BSNT_03229___ 202 -------CAGGTTCACGGGATCGTATTTGTAACACAGGAAAGCTCCGTCA 244
||||| .|.||.|||||.|||||.||||||||.||||
BPUM_1896___c 292 GCGTCAACAGGT-------GTTGTCTTTGTTACACAAGAAAGCTCAGTCA 334
BSNT_03229___ 245 CTCCAGCAGGCCAAGCTACAACATTAATTGATGTAGACAAAGTAGAAAGC 294
|.|||.|||||...||.||.||.|||.|.||||||||.|||||.|||||.
BPUM_1896___c 335 CACCAACAGGCTCTGCAACGACTTTATTAGATGTAGATAAAGTTGAAAGT 384
BSNT_03229___ 295 GTTACGTTCTTTTCATAA 312
|||||||||...||.|||
BPUM_1896___c 385 GTTACGTTCACGTCTTAA 402
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