Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03232 and BPUM_1899
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_03232.1.24716.seq
# -bsequence dna-align/BPUM_1899___capD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03232-BPUM_1899___capD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03232-BPUM_1899___capD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03232
# 2: BPUM_1899___capD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1117
# Identity: 703/1117 (62.9%)
# Similarity: 703/1117 (62.9%)
# Gaps: 179/1117 (16.0%)
# Score: 2029.5
#
#
#=======================================
BSNT_03232 1 ATGCCTAAACAGCAAACAGCAGA--------GCTAAAACCATTTTTCCAT 42
|||.|.|||.|| |.|.|..||| ||| |||||.|.|
BPUM_1899___c 1 ATGTCCAAAAAG-ATAGAAAAGAATTTGAGGGCT-------TTTTTTCGT 42
BSNT_03232 43 AACAAAACAGTTTTAGTCACTGGCGGAACGGGTTCAATCGGGAGTCAAAT 92
.|.||||||.|.||||||||.|||||.||.|||||||||||..|||||||
BPUM_1899___c 43 GATAAAACAATATTAGTCACAGGCGGTACAGGTTCAATCGGCCGTCAAAT 92
BSNT_03232 93 TGTCAAA--------CGCCTTTTGATGCTTACACCTAAACAGGTGATTGT 134
|||.||| .|| |||||| .||.||..||.|.||.||
BPUM_1899___c 93 TGTGAAAAAATTAACAGC------ATGCTT--TCCAAAGAAGATTATCGT 134
BSNT_03232 135 ATTCAGCAAAGACGACAGTAAACAGTATGTCATGAGCCAAA---AGTATG 181
.|||||||||||.|||||.|||||.|| |||||...||| ||||||
BPUM_1899___c 135 CTTCAGCAAAGATGACAGCAAACAATA---CATGATGAAAAATGAGTATG 181
BSNT_03232 182 CGGA----GGATAAGCGGCTATTATTTGTACTCGGAGATGTACGCGAT-C 226
|.|| ..|.|||.||| .||.|...|.||.||||||||.||| |
BPUM_1899___c 182 CAGATCACCCAGAAGTGGC----CTTCGCTTTAGGGGATGTACGAGATGC 227
BSNT_03232 227 ACAGAAGGGTGAATCAGGTGATGAAAGGCGTCGATATCGTCTTTCACGCG 276
| ||..|.||||..|||.|..|.||||||||.||||||.|||||||.||.
BPUM_1899___c 228 A-AGCCGAGTGAGACAGCTCGTCAAAGGCGTTGATATCATCTTTCATGCA 276
BSNT_03232 277 GCTGCGCTGAAACAGGTTCCGACATGTGAGGACCATCCATTTGAAGCGAT 326
||.||..|.|||||.||.||.||.|||||.|||.||||.||||||||..|
BPUM_1899___c 277 GCCGCCTTAAAACAAGTACCTACTTGTGAAGACAATCCGTTTGAAGCCGT 326
BSNT_03232 327 CCAGACCAATCTCATCGGCGGACAAAATGTGGTGGAAGCTGCCCTTTCAC 376
.||.||.|||.|.||||||||.||..|.||..|.||.|||||..||..||
BPUM_1899___c 327 ACAAACAAATATTATCGGCGGGCAGCACGTCATTGAGGCTGCGATTGAAC 376
BSNT_03232 377 ACCGAGTGCAG-CATGTCATTAATATCAGTACAGATAAAGCTGTATCTCC 425
| .|||..||| |||||..|.||||||...||.||.|||||.||.|||||
BPUM_1899___c 377 A-TGAGGTCAGTCATGTTGTCAATATCTCCACTGACAAAGCAGTGTCTCC 425
BSNT_03232 426 TGTGAACA----CAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTT 471
.||| |.||||||||.||.||..|..|.||.|||||..|.|||
BPUM_1899___c 426 ----GACAAATGCCATGGGTGCAACAAAATTAATTTCAGAAAAATTATTT 471
BSNT_03232 472 CATCAAGCAAACCGCCACG-------TCCAAAACAAAGGAACCTTGTTTT 514
...||||||| ||| |||.||.|||| .|||..||||||
BPUM_1899___c 472 TTCCAAGCAA------ACGAAAGTATTCCGAACCAAA-AAACGATGTTTT 514
BSNT_03232 515 GTTCGGTCCGCTTTGGAAATGTTCTCGGTTCCAGAGGTTCGGTCATCCCC 564
|.||.||.||.|||||.|||||.||.||.||.||||||||.|||||.|||
BPUM_1899___c 515 GCTCTGTGCGTTTTGGGAATGTGCTTGGATCAAGAGGTTCCGTCATTCCC 564
BSNT_03232 565 ATATTATTTGAACAGATG----ATGGAGGGTGAACCTCTGACCATCACAG 610
||..|..|..|.|||.|| |||.| .|||||.||||..|.||.|
BPUM_1899___c 565 ATCATGCTCCAGCAGTTGTTAAATGAA----AAACCTTTGACTGTTACTG 610
BSNT_03232 611 ACAAAAAC-----ATGACCAGATTTTTCATGTCAATAGACGATGCAG-CT 654
|.| |||||..|.|||||.|||||.||.||.||.||.| ||
BPUM_1899___c 611 -----ATCCTCTTATGACACGTTTTTTTATGTCCATCGAAGAGGCTGTCT 655
BSNT_03232 655 ACATTGACATTACAATCGGCTGCTATTACA-----AAAGGTGGAGAAACT 699
|..|.|||.|.||| ||.||.|| || |||||.||||||||.
BPUM_1899___c 656 -CCCTCACACTTCAA---GCAGCCAT--CATGATGAAAGGCGGAGAAACA 699
BSNT_03232 700 TTTATTTTCAAAATGGAATCACTGAAACTTGAAGAACTGAT-TC----AT 744
||.|||.||||.|||||.|||.|..|.|||| ||||| || |.
BPUM_1899___c 700 TTCATTCTCAAGATGGAGTCATTACAGCTTG-----CTGATCTCTTAAAA 744
BSNT_03232 745 GGGTTTGAAGAATATGC-------------ATCGCAGCACGGG---CTCC 778
|.||||.|||||||||| .|||||.|.|.|| .||.
BPUM_1899___c 745 GCGTTTCAAGAATATGCTGATCAAATCAGTGTCGCATCTCCGGAGATTCT 794
BSNT_03232 779 CGCGGCCGGCTGCAGTAGAAGTGGGCAAGCGTCCAGGTGAAAAGCTTCAC 828
||..|.||| ||| || |.||.||.||||||||||||
BPUM_1899___c 795 CGTTGTCGG--------GAA------AA--GACCTGGAGAAAAGCTTCAC 828
BSNT_03232 829 GAAGAATTAACATCTCCACATGAAATTGAATCACTGTATGA--ATGGGGC 876
|||||..|.||||.|||.||.|||...||..||||.|.||| |||
BPUM_1899___c 829 GAAGAGCTTACATTTCCGCACGAAGCAGATGCACTATTTGAGCATG---- 874
BSNT_03232 877 AAC--CTTTATGCGATCCTTCCAGAGCCGGAAAAACATCCTGACTTTCGC 924
||| .|||||||.||..|.|||..|||..||...|||||||||||||..
BPUM_1899___c 875 AACAATTTTATGCCATTTTGCCAAGGCCCAAACGTCATCCTGACTTTCAA 924
BSNT_03232 925 AAAGTCAATCTGCCTGGGT-ATCAAT--CAGATC-----AAGCCCCGCTC 966
|||||| |.|| | |.|||| ||.||| ||||.||.|||
BPUM_1899___c 925 AAAGTC-----GACT---TAACCAATTACACATCCAATGAAGCGCCTCTC 966
BSNT_03232 967 ATTACGAAAGAAAGAATTGCT-CAGATTATTGAAGAATTGCAT------C 1009
|||||.||||||| |..||.| ||.||.||||||.||||.||| |
BPUM_1899___c 967 ATTACAAAAGAAA-AGCTGTTCCACATCATTGAACAATTACATCACACGC 1015
BSNT_03232 1010 AAGAGAAAAAGGCATAA 1026
|..|.||||| ||||
BPUM_1899___c 1016 ATCATAAAAA---ATAA 1029
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