Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03241 and BPUM_1906

See Amino acid alignment / Visit BSNT_03241 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence dna-align/BSNT_03241___ypmS.1.24716.seq
#    -bsequence dna-align/BPUM_1906___ypmS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03241___ypmS-BPUM_1906___ypmS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03241___ypmS-BPUM_1906___ypmS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03241___ypmS
# 2: BPUM_1906___ypmS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 613
# Identity:     388/613 (63.3%)
# Similarity:   388/613 (63.3%)
# Gaps:          95/613 (15.5%)
# Score: 1135.0
# 
#
#=======================================

BSNT_03241___      1 ATGAATAAGTGGAAGCGACTGTTTTTTATATTGCTTGCAATCAAT-----     45
                     |||||.||||||||..|..|.||||||||.||.||||||||||||     
BPUM_1906___y      1 ATGAAAAAGTGGAAAAGCTTATTTTTTATTTTACTTGCAATCAATCTATT     50

BSNT_03241___     46 -TTTATCCTCGCCGCCGGGTTTGTGGCACTT--GTTTTGCTCCCGGGGGA     92
                      .||.|.||.|||        ||.||.|.||  .|.|||||.|       
BPUM_1906___y     51 GATTGTACTTGCC--------TGCGGTATTTTAATGTTGCTGC-------     85

BSNT_03241___     93 ACAGGCTCAGGTGAA--GGATTCATC--------TG-AGAGCGAGTATGG    131
                      |||||   |||.||  .|.||||.|        || |.|||||||||..
BPUM_1906___y     86 -CAGGC---GGTCAATCCGCTTCAACGAAAGAATTGAAAAGCGAGTATTC    131

BSNT_03241___    132 ATTTCAAGTGACAAGCACAAAAGAA----TCATTAGCTGCGTTTGTTAAC    177
                     .|||.|..|..|.|||.||||||||    |||.|||||       |||  
BPUM_1906___y    132 TTTTAATATATCTAGCTCAAAAGAATCACTCACTAGCT-------TTA--    172

BSNT_03241___    178 TCA-----TATTTAAACGACAAAGCA----TCAA---ACAAGCTTGATTA    215
                     |||     |||||    ||.|||.||    ||||   |.|.||..||.|.
BPUM_1906___y    173 TCAATGATTATTT----GAAAAATCAAGGGTCAAGTGATATGCCAGACTT    218

BSNT_03241___    216 TAAAGTAGAGATTGATGATGATGTTCATGTCGCAGGGAAAATCAAGGCAT    265
                     |.|.||.|.|||.|||.|.|||||..|.||..||||....||.||.||.|
BPUM_1906___y    219 TCATGTGGCGATCGATCAAGATGTGAAAGTAACAGGCGCCATTAAAGCTT    268

BSNT_03241___    266 TTTCCACGTCTATTGATGCGTTTA----TCGCTTTTGAGCCGACTGTGAA    311
                     |.||..||.|.||||||||    |    ||.|.|||..|||.|||||..|
BPUM_1906___y    269 TCTCTTCGACGATTGATGC----AAACGTCTCATTTACGCCAACTGTTGA    314

BSNT_03241___    312 AAAAAACGGTGATGT-------AGAGCTGAAT-GTCACGAAATTTTCGTT    353
                     |.|.||.||||||||       |.|| ||.|| |||       ||||..|
BPUM_1906___y    315 AGATAATGGTGATGTGCTTTTGAAAG-TGGATGGTC-------TTTCAAT    356

BSNT_03241___    354 AGGGAAATTGAGTATACCAATTAGCTTTGTGTTAAATTATAT-GGACAGC    402
                     .||..||||.||.||.||..||||.|||||..|||..||.|| ||.||| 
BPUM_1906___y    357 TGGTCAATTAAGCATTCCGGTTAGTTTTGTTCTAAGCTACATGGGCCAG-    405

BSNT_03241___    403 TTTTATGAATTGCCGTCATTTGTCCATGTTCACCCCGGA-GAAAAAAGCA    451
                     ||.||||||.||||...|||.||.|||| |.|..||||| .||||||...
BPUM_1906___y    406 TTCTATGAACTGCCAGAATTCGTTCATG-TGAAACCGGATCAAAAAACGG    454

BSNT_03241___    452 TTGAAGTGCGTTTGTCAGAAATGCCTTTAACGAATGGAATGTATGTCAAA    501
                     ||||||||||..|.|||||||||||..|.|||||||..||||||||.|||
BPUM_1906___y    455 TTGAAGTGCGCCTTTCAGAAATGCCACTGACGAATGATATGTATGTGAAA    504

BSNT_03241___    502 GCGGATAAGATAAATTTAGAAAAAGATGAAATTGAGTTTTCCTATTACCA    551
                     |||.|.||.||..||.||||.||.||||||||||||||.||||||||.||
BPUM_1906___y    505 GCGAACAAAATTGATCTAGAGAACGATGAAATTGAGTTCTCCTATTATCA    554

BSNT_03241___    552 TCCTAAACAATAG    564
                     |||.||.||||||
BPUM_1906___y    555 TCCAAAGCAATAG    567


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