Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03242 and BPUM_1907
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_03242___ypmR.1.24716.seq
# -bsequence dna-align/BPUM_1907___ypmR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03242___ypmR-BPUM_1907___ypmR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03242___ypmR-BPUM_1907___ypmR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03242___ypmR
# 2: BPUM_1907___ypmR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 852
# Identity: 516/852 (60.6%)
# Similarity: 516/852 (60.6%)
# Gaps: 174/852 (20.4%)
# Score: 1493.5
#
#
#=======================================
BSNT_03242___ 1 TTGAAGCTGCGCATTT--TTTCAATCATGGCCAGTTTGA----------T 38
|||||| ||.|.||| |||..|| |.||| |
BPUM_1907___y 1 TTGAAG--GCTCGTTTGATTTTGAT---------TGTGATGTCTCTAGCT 39
BSNT_03242___ 39 TTTGCTTCTTACTGCGTGT-------ACGA-----GCATACGTACATCAT 76
|||| |||||.||||.||| |.|| |||||
BPUM_1907___y 40 TTTG-TTCTTTCTGCATGTTCCGCGCAAGAGGCTGGCATA---------- 78
BSNT_03242___ 77 CTGAGGGA-AAACAAAAAGCCCATGAAACGAAAAC--AAAAGAACACATT 123
|.||| ||||.|.|||.| |.|| ||.|| |||||||||.|||
BPUM_1907___y 79 ---AAGGATAAACTAGAAGAC----ACAC-AAGACGTAAAAGAACATATT 120
BSNT_03242___ 124 GTCATAGCGGCTGTCGGAGATTCGCTGACAGAAGGAGTCGGAGATCCCGA 173
..|||.||.||.||.||||||||..|.|||||||||.|||||||||...|
BPUM_1907___y 121 ACCATCGCAGCGGTTGGAGATTCCTTAACAGAAGGAATCGGAGATCAACA 170
BSNT_03242___ 174 CGGAAAGGGATATGTCGGCAAGGTGGCGGATTCTATCCGGTCAGATAAAC 223
...|||.|||||||..||||.| |.||| .|||||.|
BPUM_1907___y 171 AAAAAAAGGATATGCAGGCATG------------ACCCG---TGATAAGC 205
BSNT_03242___ 224 AAGTCAAAACGGTCGA---CGTG---------------AAAAATTATGCC 255
.|| ||.||||.|| |||| |||||.||||||
BPUM_1907___y 206 TAG---AAGCGGTGGATGGCGTGCAATCTGTCACATTAAAAAACTATGCC 252
BSNT_03242___ 256 GTAAAAGG-----GAACCGTTCGGATGATTTATTAGAAAAACTAAAAGAT 300
.|.||||| ||| |||..|||||||||.|||.|.|||||||.
BPUM_1907___y 253 ATTAAAGGCAGTAGAA-----CGGTAGATTTATTAAAAAGATTAAAAGAA 297
BSNT_03242___ 301 AAAAAGGTTCAAAAAGGCATAAAGGACGCAGATTATGTCTTTTTTACAAT 350
||||||||.|||.|.||..|.||.||.||.||.|||.||||.|||||.||
BPUM_1907___y 298 AAAAAGGTGCAAGACGGTCTGAAAGATGCTGACTATATCTTCTTTACGAT 347
BSNT_03242___ 351 TGGCGGTAATGATTTGATGAAAATCCTTCGCCAAAACTTTCTGCAA-TTA 399
.|||||.||||||||.|||.|..||.||||.|||||..|.|| ||| ||.
BPUM_1907___y 348 CGGCGGCAATGATTTAATGCATGTCGTTCGTCAAAATGTACT-CAATTTG 396
BSNT_03242___ 400 ACAGTTGAACCGTTTCAGGAAGCGGAAAAACCGTACGAAAAGCGCTTTGA 449
||..|||..||.|||||..|||.|.|....||.|..||..||||||||.|
BPUM_1907___y 397 ACGTTTGCTCCTTTTCAAAAAGAGCAGGGGCCTTTTGAGGAGCGCTTTAA 446
BSNT_03242___ 450 AAAAATCATTTCTGAAATTCGCGAGCTGAATGATCACGCTGAGCTGATTT 499
||..||..||.||.||.|..|.||||..|||||.||.||..||.|.||.|
BPUM_1907___y 447 AACCATTCTTGCTCAACTGAGAGAGCATAATGACCATGCGAAGATCATGT 496
BSNT_03242___ 500 ATGTCAGCATGTACAATCCGTTTACGTTTACATTATCA--GAACTAAATG 547
||||.||||||||.|||||.||||..|| ||.|.||| |||||.||.|
BPUM_1907___y 497 ATGTAAGCATGTATAATCCTTTTAAATT--CAGTCTCACTGAACTGAAAG 544
BSNT_03242___ 548 AAATAAATGGTGTCGTCACGGATTGGAACCATATTGCTG------AAAAA 591
|.||..|||..|||||||..||.||||| |||.| |||||
BPUM_1907___y 545 ACATTGATGAAGTCGTCAAAGACTGGAA------TGCCGTCGCCAAAAAA 588
BSNT_03242___ 592 GAGCTGAAAAAAGA--TAAACATGCAAAAATCGTTCA------------T 627
||.||.|||||||| ..||| ||..|||| |.||| |
BPUM_1907___y 589 GAACTAAAAAAAGACGGCAAC--GCTGAAAT-GATCAACGTAGCAGATTT 635
BSNT_03242___ 628 AT----CGAAGATT-TGTTCAATCAAAAA--AGTGACAGCAGCCGAATTT 670
|| .||||||| || ||.||||| |.||.||
BPUM_1907___y 636 ATTTGAGGAAGATTCTG----ATGAAAAATTACTGGCA------------ 669
BSNT_03242___ 671 CTGAGGAAGATGATTTTCATCCTAATGGTACGGGTTATTCTCTTATCGCA 720
||.|||||||||||.||.||....|.|||.||.||||||||.|||
BPUM_1907___y 670 -----GATGATGATTTTCACCCAAACCAAAAGGGGTACTCTCTTATGGCA 714
BSNT_03242___ 721 AAGCGCGTCTATC----AAGCCATTAAAAAAGAAGGATTACCGAAAGAGT 766
||.||..|.| || ||| |.||||||||||||.|.|||||.||.|
BPUM_1907___y 715 AATCGATTAT-TCTCCAAAG---TGAAAAAAGAAGGACTGCCGAAGGAAT 760
BSNT_03242___ 767 AG 768
||
BPUM_1907___y 761 AG 762
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