Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03248 and BPUM_1912

See Amino acid alignment / Visit BSNT_03248 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:44
# Commandline: needle
#    -asequence dna-align/BSNT_03248___yplP.1.24716.seq
#    -bsequence dna-align/BPUM_1912___yplP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03248___yplP-BPUM_1912___yplP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03248___yplP-BPUM_1912___yplP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03248___yplP
# 2: BPUM_1912___yplP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1162
# Identity:     601/1162 (51.7%)
# Similarity:   601/1162 (51.7%)
# Gaps:         359/1162 (30.9%)
# Score: 1368.5
# 
#
#=======================================

BSNT_03248___      1 ATGAATAGTGCACCAAAACTCAATACATTTCAACATCTA---ATCGGAGA     47
                     |||        |||   |||| ||.|.|||  ||.||||   || |||||
BPUM_1912___y      1 ATG--------ACC---ACTC-ATTCGTTT--ACGTCTATATAT-GGAGA     35

BSNT_03248___     48 ACATCAAACTTTTCTGGAAGCGAAGCG----AATC-----GCCAAGCAGT     88
                     .||||||         |||...|||||    |.||     ||.|||||.|
BPUM_1912___y     36 GCATCAA---------GAAATAAAGCGTGCCATTCACCTAGCAAAGCAAT     76

BSNT_03248___     89 TCTCGTTATCGGAGCTTCCTGTCTTAATAACAGGAAAAATCGGAACAGGC    138
                     ||.|...|...||.|..||.|||||.||.||||||.|||||||.||||||
BPUM_1912___y     77 TCACAAAACACGAACAGCCAGTCTTGATCACAGGAGAAATCGGCACAGGC    126

BSNT_03248___    139 AAAA------------ATCACTTCGCACATGC--------CATACACTTG    168
                     ||||            ||.|..|.||.|||||        ||.||.||| 
BPUM_1912___y    127 AAAACGCGATTTGCCTATGAAATTGCTCATGCATCGGCTTCAAACGCTT-    175

BSNT_03248___    169 GAATCTTCGAGAAGCAATGAACCGTTTATGAGCGTCAATTGCAGCACCCA    218
                                   ||.|||..|.|.|||        ||||    .||||
BPUM_1912___y    176 --------------CACTGACACATCTAT--------ATTG----TCCCA    199

BSNT_03248___    219 TTCGGAAGAAACCCTTTTTCATG-AGCT-TTTTG------GCCCTAACGG    260
                     |.|              |..||| |||| ..|||      |||.|.||||
BPUM_1912___y    200 TCC--------------TAGATGAAGCTACGTTGCAGAAAGCCTTCACGG    235

BSNT_03248___    261 AAACACAGGTGTTTTTCAAAAAGCGGT-ACGAGGAACCCTTTTTCTTGAT    309
                     |                |||||.|.|| |     ||..||||.|.|.||.
BPUM_1912___y    236 A----------------AAAAACCCGTCA-----AATTCTTTATTTAGAC    264

BSNT_03248___    310 GATGTATGGCGCATGCCTGCTTCTGTA---CA----AGC-TCAGCT----    347
                     ||..|        |||||..||..|||   ||    ||| ||||.|    
BPUM_1912___y    265 GAAAT--------TGCCTCATTAAGTATTCCAATGCAGCATCAGGTCATT    306

BSNT_03248___    348 -GTTAAAAGCGCTTGATTC-AGACACGGAGAAACCGCGAATGATCTGTGC    395
                      |||            ||| |||               |||      |.|
BPUM_1912___y    307 CGTT------------TTCTAGA---------------AAT------TTC    323

BSNT_03248___    396 TTCTGCAGAC--CGATCCGTGGAAC---------ATACATTCAGGCA---    431
                     |.||||| ||  ..|||..||..||         ||..||..|||||   
BPUM_1912___y    324 TCCTGCA-ACAAAAATCATTGCCACTTCGTCTTTATCAATAGAGGCATTG    372

BSNT_03248___    432 AG----------ACTTATTCTACAGACTGAAC-ATTTTAACGCTCA----    466
                     ||          ||.| ||.|||   |||||| .|||||.||||.|    
BPUM_1912___y    373 AGGGTTTCATCTACCT-TTTTAC---CTGAACTGTTTTATCGCTTAAATG    418

BSNT_03248___    467 ------------CACTGCCCGAATTATCGGAACGAAAAAGCGATATTCCG    504
                                 |..||||...||||.|.||.|||||||..||.|||||.
BPUM_1912___y    419 TTTTCCATTTGCCTTTGCCGTCATTAGCAGATCGAAAAACAGACATTCCT    468

BSNT_03248___    505 CTTTTGAC-ACAGCATTTTCTCTCAAATTCCGG---TCAGCA--------    542
                     .|.||.|| ||.||  |||||      |||.||   |.||||        
BPUM_1912___y    469 GTGTTAACAACTGC--TTTCT------TTCAGGAGCTGAGCATGACACCT    510

BSNT_03248___    543 -ATTCTTAATCGATCCCTCCGTTTTTCCCGTG----CTTG-AGAAGCATG    586
                      ||     ||.|||||....||||     |.|    |||| ||.||.||.
BPUM_1912___y    511 GAT-----ATTGATCCAAGTGTTT-----GGGAAACCTTGCAGGAGTATC    550

BSNT_03248___    587 CATTTGAAGGCAATGTCAGGGAATTAAAAAA---CGCTGCAGATTATATG    633
                     |.||||||||.||.|||..||||.|.|||||   || |.||    |||| 
BPUM_1912___y    551 CGTTTGAAGGAAACGTCCAGGAACTTAAAAATATCG-TTCA----ATAT-    594

BSNT_03248___    634 GCGGCAG----TATCAAGCGGGGGAACG--ATT----CAGCCATATGACC    673
                     ||.||||    |.||.|| |||..||||  |||    ||.|      |||
BPUM_1912___y    595 GCTGCAGTCATTCTCGAG-GGGCAAACGGTATTTTTACACC------ACC    637

BSNT_03248___    674 TGCCGCC------GTATA--------TT----AGAGGCGCGATAGACAGA    705
                     |||||||      || ||        ||    |||||     ||.|..||
BPUM_1912___y    638 TGCCGCCCTTTGTGT-TAACCCCTCTTTCACCAGAGG-----TAAAAGGA    681

BSNT_03248___    706 AAAACGTCGAAGAAAAAAGCGAAGCTGCTGACTTTAATGGAAAAAGC-TG    754
                     ||||.|  ||||||       .|.|.|||.||..|||||| |||||| .|
BPUM_1912___y    682 AAAAAG--GAAGAA-------CACCAGCTCACACTAATGG-AAAAGCAAG    721

BSNT_03248___    755 AGTTTTTGTTTATTTTGGAAACAATAAAAGTAT-TGAACGAAAAAGGAGA    803
                     |||||.|.||..|..|.|||.|.||.||| |.| |.||.||.|||||.||
BPUM_1912___y    722 AGTTTGTTTTCCTGCTAGAAGCTATTAAA-TCTCTCAATGAGAAAGGTGA    770

BSNT_03248___    804 ACCTGCCAGCAGACGGATCATTTCTGAACACAGCAAAAATACCCAAACCT    853
                     |.||||.|||||.||.|||.|.|||||....||||||.|...|.|.|.|.
BPUM_1912___y    771 AGCTGCTAGCAGGCGCATCTTGTCTGAGTTAAGCAAACAAGGCGACATCC    820

BSNT_03248___    854 CGTTAACTCCTCAGCAGGTCAGAAGCCGTCTCGACTATTTGGAGAAAAAA    903
                     ||.|.||.|||||||||||.||.|||||..|.||..|..|.|||||||||
BPUM_1912___y    821 CGCTGACCCCTCAGCAGGTGAGGAGCCGATTAGATGACCTTGAGAAAAAA    870

BSNT_03248___    904 GATTATGTCACCAAAAGCCGCGGACGCGCAGGCACAAAAATTACCTTTGA    953
                     |..||.||.||.|||.|....||..|.||.||||||||.|||||..||||
BPUM_1912___y    871 GCATACGTGACGAAAGGAAAAGGCAGGGCCGGCACAAAGATTACACTTGA    920

BSNT_03248___    954 GGG-------------------CTTGAGCTTTATAGAGACGTTAAAAAAT    984
                     .||                   |||||...|||||.|...|||.||.|| 
BPUM_1912___y    921 AGGTCTGTCATTCCTAAAGTCACTTGATGGTTATATACCGGTTCAATAA-    969

BSNT_03248___    985 CAAATGATCTAG    996
                                 
BPUM_1912___y    969 ------------    969


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