Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02921 and BPUM_1916

See Amino acid alignment / Visit BSNT_02921 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:28
# Commandline: needle
#    -asequence dna-align/BSNT_02921___thyA.1.24716.seq
#    -bsequence dna-align/BPUM_1916___thyA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02921___thyA-BPUM_1916___thyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02921___thyA-BPUM_1916___thyA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02921___thyA
# 2: BPUM_1916___thyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 954
# Identity:     499/954 (52.3%)
# Similarity:   499/954 (52.3%)
# Gaps:         273/954 (28.6%)
# Score: 969.0
# 
#
#=======================================

BSNT_02921___      1 ATGACGCAATTCGAT-AAACAATACAATTCAATTATAAAGGATATTAT-C     48
                                  || |||||||||||         |.||    |||| |
BPUM_1916___t      1 -------------ATGAAACAATACAA---------AGAG----TTATGC     24

BSNT_02921___     49 AATAATGGAATCTCAG-ACGAAGAGTTTGATGTAAGAACCAAGTGGGACT     97
                     ..|.|| |.||..||| |||      ..||||.||     ||| |.||  
BPUM_1916___t     25 CGTCAT-GTATTACAGCACG------GGGATGAAA-----AAG-GTGA--     59

BSNT_02921___     98 CAGA--TGGAACACCGGCACATACTCTAAGTGTAATGAGTAAGCAAATGA    145
                     ||||  .||||||  ||||||..|...|.||    |..||.|.||.||||
BPUM_1916___t     60 CAGAACGGGAACA--GGCACAATCAGCACGT----TCGGTTACCAGATGA    103

BSNT_02921___    146 GATTCGACAACT---CAG--AGG--TTCCGATTTTAACGACAAA-AAAGG    187
                     ||||.||    |   |||  |||  ||||..|||||||.||||| |||  
BPUM_1916___t    104 GATTTGA----TTTGCAGGAAGGATTTCCACTTTTAACAACAAAGAAA--    147

BSNT_02921___    188 TTG--CCTGGAAAACAGCCATTAAAGAGTTGCTCTGGATTTGGCAGCTGA    235
                     |||  ||| ||||.||...|||.|.||||||||.|||.|||      |.|
BPUM_1916___t    148 TTGCACCT-GAAATCAATTATTCATGAGTTGCTTTGGTTTT------TAA    190

BSNT_02921___    236 AATCTAAT---GATGTTAATGAT---TTAAACAAGATGGGCGTACATATT    279
                     ||..|.||   .||||.||  ||   ||.|..||.|| ||.||.|.|||.
BPUM_1916___t    191 AAGGTGATACAAATGTCAA--ATACCTTCAGGAAAAT-GGTGTCCGTATA    237

BSNT_02921___    280 TGGGATCAGTGGAAACAAGAAGACGGC--ACCATCGGACATGCATATGGA    327
                     |||.||.|.|||..|.|.|||.|.|||  ||  |.||.|.||..||.|||
BPUM_1916___t    238 TGGAATGAATGGGCAGATGAAAATGGCGAAC--TAGGCCGTGTGTACGGA    285

BSNT_02921___    328 TTTCAGCTGGGGAAGAAAAACAGAAGTCT-----------AAACGGAGAA    366
                     ...||| |||.||             |||           |.||||.||.
BPUM_1916___t    286 GCGCAG-TGGCGA-------------TCTTGGGCTAGTGGAGACGGTGAG    321

BSNT_02921___    367 AAAGTGGATCAGGT-----AGACT-ATCTTCTTCATCAAT-TGAAGAACA    409
                     |..|||||||||.|     || || |||     || |.|| |..||.|.|
BPUM_1916___t    322 ACTGTGGATCAGATCACAAAG-CTGATC-----CA-CGATATCGAGCATA    364

BSNT_02921___    410 ACCCGTCTTCACGCAGACATATT--ACAATGCTGTGGAATCCTGATGATT    457
                     |.||...||||.|.|||| ||.|  .||..||| |||||.||.|.|||..
BPUM_1916___t    365 ATCCCAATTCAAGAAGAC-TAATCGTCAGCGCT-TGGAACCCGGGTGAAA    412

BSNT_02921___    458 TAGACGCAATGTCCTTAACGCCATG--------TGTATACGAGACACAAT    499
                     |.||...||||.|..|..|.|||||        |||.|        ||||
BPUM_1916___t    413 TTGATCAAATGGCGCTGCCACCATGTCATTGTCTGTTT--------CAAT    454

BSNT_02921___    500 GGTACG--TTAAACATGGGAAA-----CT--CCACCTTGAGGTAAGAGCA    540
                     ..||||  |.||||   |||||     ||  |||.|||.|...||||.| 
BPUM_1916___t    455 TTTACGTATCAAAC---GGAAAGCTTTCTTGCCAGCTTTATCAAAGATC-    500

BSNT_02921___    541 CGGAGCAATGATATGGCATTAGG-----------AAATCCCTTCA-ATG-    577
                        .|||  |||||....|||||           |.||..||||| ||| 
BPUM_1916___t    501 ---GGCA--GATATCTTTTTAGGTGTTCCATTTAATATTGCTTCATATGC    545

BSNT_02921___    578 TATTCCAGTACAATGTGTTGCAGCGCATGATTGCTCAAGTGACTGGTTAT    627
                     |.|||  .|||.|||           ||||||||..||||.||...|..|
BPUM_1916___t    546 TCTTC--TTACGATG-----------ATGATTGCCAAAGTCACAAATCTT    582

BSNT_02921___    628 GAGCTTGGTGAATATATCTTTAACATTGGGGATTGC-CATGTGTA-CACA    675
                     ||||..||.||.|.|.|...||...|.||||| ||| |||.|.|| ||.|
BPUM_1916___t    583 GAGCCAGGAGAGTTTGTTCATACGCTAGGGGA-TGCTCATATTTATCAGA    631

BSNT_02921___    676 CGTCATAT-----AGACAATTTGAAAATTCAAATGGAAAGAGAACAGTTT    720
                      .||||.|     ||     .||||.||.|||.|         |.||..|
BPUM_1916___t    632 -ATCATCTTCCTCAG-----GTGAACATGCAACT---------AGAGCGT    666

BSNT_02921___    721 GAAGCACCTG---------AACTATGGATCA----ATCCTGAAGTGAA-A    756
                     ||.|.||.||         |.||..|.||||    |    ||.||||| |
BPUM_1916___t    667 GAGGAACGTGCGCTTCCGCAGCTTCGCATCACAAGA----GATGTGAAGA    712

BSNT_02921___    757 G-ATTTTT-ATAACTTTACCATTGATGATTT--------CAAGTTA----    792
                     | |||||| ||   ||.||..|.||||||||        .||.|||    
BPUM_1916___t    713 GCATTTTTGAT---TTCACGTTCGATGATTTTGTACTTGAAAATTATGAT    759

BSNT_02921___    793 ----ATC--AACTATAAACATGGGGACAAGCTTTTATTTGAGGTAGCGGT    836
                         |||  .||..||||     |||.|||....|.|.|||         
BPUM_1916___t    760 CCGCATCCGCACATTAAA-----GGAGAAGTCAGTGTATGA---------    795

BSNT_02921___    837 TTAA    840
                         
BPUM_1916___t    795 ----    795


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