Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03258 and BPUM_1922
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:44
# Commandline: needle
# -asequence dna-align/BSNT_03258___ilvD.1.24716.seq
# -bsequence dna-align/BPUM_1922___ilvD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03258___ilvD-BPUM_1922___ilvD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03258___ilvD-BPUM_1922___ilvD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03258___ilvD
# 2: BPUM_1922___ilvD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1680
# Identity: 1320/1680 (78.6%)
# Similarity: 1320/1680 (78.6%)
# Gaps: 6/1680 ( 0.4%)
# Score: 5124.0
#
#
#=======================================
BSNT_03258___ 1 ATGGCAGAATTACGCAGTAATATGATCACACAAGGAATCGATAGAGCTCC 50
|||||||||.|.||.|||||.|||||.|.|||||||||.||.|||||.||
BPUM_1922___i 1 ATGGCAGAACTTCGTAGTAACATGATTAAACAAGGAATTGACAGAGCACC 50
BSNT_03258___ 51 GCACCGCAGTTTGCTTCGTGCAGCAGGAGTAAAAGAAGAGGATTTCGGCA 100
.|||||.||.||.||..|.|||||.||.|||||.||.|||||.|||||||
BPUM_1922___i 51 TCACCGAAGCTTACTAAGAGCAGCGGGGGTAAAGGATGAGGACTTCGGCA 100
BSNT_03258___ 101 AGCCGTTTATTGCGGTGTGTAATTCATACATTGATATCGTTCCCGGTCAT 150
|.||.||||||||.||.||||||||.||.||||||||.||.||.||.|||
BPUM_1922___i 101 AACCATTTATTGCTGTATGTAATTCCTATATTGATATTGTCCCAGGACAT 150
BSNT_03258___ 151 GTTCA-CTTGCAGGAGTTTGGGAAAATCGTAAAAGAAGCAATCAGAGAAG 199
||.|| ||| |||||.||.||.||.||.||.||||||||.||..|.||.|
BPUM_1922___i 151 GTCCATCTT-CAGGAATTCGGAAAGATTGTGAAAGAAGCTATTCGTGAGG 199
BSNT_03258___ 200 CAGGGGGCGTTCCGTTTGAATTTAATACCATTGGGGTAGATGATGGTATC 249
|.||.||.||.||.||||||||||||||.||||||||.||||||||.||.
BPUM_1922___i 200 CTGGCGGGGTCCCATTTGAATTTAATACGATTGGGGTCGATGATGGAATT 249
BSNT_03258___ 250 GCAATGGGGCATATCGGTATGAGATATTCGCTGCCAAGCCGTGAAATTAT 299
||||||||.||||||||.|||||||||||.||.||||||||||||||.||
BPUM_1922___i 250 GCAATGGGTCATATCGGGATGAGATATTCACTACCAAGCCGTGAAATCAT 299
BSNT_03258___ 300 CGCAGACTCTGTGGAAACGGTTGTATCCGCACATTGGTTTGACGGAATGG 349
.||.||||||||.|||||.||||||||.||.||.||||||||.|||||||
BPUM_1922___i 300 TGCTGACTCTGTCGAAACCGTTGTATCTGCTCACTGGTTTGATGGAATGG 349
BSNT_03258___ 350 TCTGTATTCCGAACTGCGACAAAATCACACCGGGAATGCTTATGGCGGCA 399
|.||||||||.||||||||.|||||.|||||.||.|||.|.|||||.||.
BPUM_1922___i 350 TTTGTATTCCTAACTGCGATAAAATTACACCAGGGATGATGATGGCAGCG 399
BSNT_03258___ 400 ATGCGCATCAACATTCCGACGATTTTTGTCAGCGGCGGACCGATGGCGGC 449
|||||..||||.|||||||||.|.|||||||||||.||.|||||||..||
BPUM_1922___i 400 ATGCGTGTCAATATTCCGACGGTCTTTGTCAGCGGTGGTCCGATGGAAGC 449
BSNT_03258___ 450 AGGAAGAACAAGTGACGGGCGAAAAATCTCCCTTTCCTCAGTATTCGAAG 499
.||.|||||||||||.||..|||||||.||.|||||.||.|||||.||||
BPUM_1922___i 450 GGGTAGAACAAGTGATGGCAGAAAAATTTCACTTTCTTCTGTATTTGAAG 499
BSNT_03258___ 500 GGGTAGGCGCCTACCAAGCAGGGAAAATCAACGAAAACGAGCTTCAA-GA 548
|.||.||.||.||.||..||||.|||||.||||||.|.|| .||.|| ||
BPUM_1922___i 500 GCGTCGGTGCTTATCAGTCAGGTAAAATTAACGAAGAGGA-ATTAAATGA 548
BSNT_03258___ 549 ACTAGAGCAGTTCGGATGCCCAACGTGCGGGTCTTGCTCAGGCATGTTTA 598
|.||||.||||||||.||.||.||.|||||.|||||.|||||.|||||||
BPUM_1922___i 549 ATTAGAACAGTTCGGCTGTCCGACCTGCGGATCTTGTTCAGGTATGTTTA 598
BSNT_03258___ 599 CGGCGAACTCAATGAACTGTCTGTCAGAAGCACTTGGTCTTGC-CTTGCC 647
|.||.|||||||||||||||.|..||||.||||||||..|||| ||| ||
BPUM_1922___i 599 CAGCAAACTCAATGAACTGTTTAGCAGAGGCACTTGGCATTGCTCTT-CC 647
BSNT_03258___ 648 GGGTAATGGAACCATTCTGGCGACATCTCCGGAACGCAAAGAGTTTGTGA 697
.||.||||||||.|||.||||||||||.||.||.||.|.|||.||||.||
BPUM_1922___i 648 TGGAAATGGAACGATTTTGGCGACATCACCAGAGCGAAGAGAATTTGCGA 697
BSNT_03258___ 698 GAAAATCGGCTGCGCAATTAATGGAAACGATTCGCAAAGATATCAAACCG 747
.|||.||.||....|||.|.|||||....|||...||.|||||.||||||
BPUM_1922___i 698 AAAAGTCAGCAAAACAACTGATGGAGCTCATTAAAAAGGATATTAAACCG 747
BSNT_03258___ 748 CGTGATATCGTTACAGTAAAAGCGATTGATAACGCGTTTGCACTCGATAT 797
||||||||.||.||.|.||||||.|||||||||||.||||||.|.|||||
BPUM_1922___i 748 CGTGATATTGTGACTGAAAAAGCCATTGATAACGCATTTGCATTAGATAT 797
BSNT_03258___ 798 GGCGCTCGGAGGTTCTACAAATACCGTTCTTCATACGCTTGCCCTTGCAA 847
|||.||.||.||.||.||.|||||.||||||||.||.||.||..|.||||
BPUM_1922___i 798 GGCACTTGGTGGGTCAACGAATACTGTTCTTCACACACTGGCGATCGCAA 847
BSNT_03258___ 848 ACGAAGCCGGCGTTGAATACTCTTTAGAACGCATTAACGAAGTCGCTGAG 897
|.|||||.||.||||||||.||..|.||||||||.||.|||||.||.|||
BPUM_1922___i 848 ATGAAGCAGGTGTTGAATATTCACTTGAACGCATCAATGAAGTAGCAGAG 897
BSNT_03258___ 898 CGCGTGCCGCACTTGGCCAAGCTGGCGCCTGCATCGGATGTGTTTATTGA 947
||.|||||.||.||..|.||.||.|||||.||.||||||||.|.||||||
BPUM_1922___i 898 CGTGTGCCTCATTTATCAAAACTTGCGCCAGCTTCGGATGTTTATATTGA 947
BSNT_03258___ 948 AGATCTTCATGAAGCGGGCGGCGTGTCAGCGGCTCTGAATGAGCTTTCCA 997
.|||.|.||||||||.||||||||..||||.||.||.|||||..|.||||
BPUM_1922___i 948 GGATTTACATGAAGCAGGCGGCGTCACAGCTGCGCTAAATGAATTGTCCA 997
BSNT_03258___ 998 AGAAAGAAGGAGCGCTTCATTTAGATGCGCTGACTGTTACAGGAAAAACT 1047
|.||||||||.||.||||||||||||.|..||||.||.||||..|||||.
BPUM_1922___i 998 AAAAAGAAGGCGCACTTCATTTAGATACAATGACCGTCACAGCGAAAACG 1047
BSNT_03258___ 1048 CTTGGAGAAACCATTGCCGGACATGAAGTAAAGGATTATGACGTCATTCA 1097
|||||.||.|.|||||||||.||||||||.||.||.|||.|.||||||.|
BPUM_1922___i 1048 CTTGGTGAGAACATTGCCGGTCATGAAGTCAAAGACTATAATGTCATTTA 1097
BSNT_03258___ 1098 TCCGCTGGATCAACCATTCACTGAAAAGGGTGGCCTTGCTGTTTTATTCG 1147
|||..|.|||.|.|||||.|||||||||||.|||.|.||.|||.||||.|
BPUM_1922___i 1098 TCCAATCGATAAGCCATTTACTGAAAAGGGCGGCTTAGCCGTTCTATTTG 1147
BSNT_03258___ 1148 GTAATCTAGCTCCGGACGGCGCTATCATTAAAACAGGCGGCGTACAGAAT 1197
|.||.||.||.||.||.||.||||||||||||||.|||||.|||||..||
BPUM_1922___i 1148 GAAACCTTGCGCCAGATGGAGCTATCATTAAAACGGGCGGTGTACAAGAT 1197
BSNT_03258___ 1198 GGGATTACAAGACACGAAGGGCCGGCTGTCGTATTCGATTCTCAGGACGA 1247
|||||.|||.|.|||||||||||.||..|||||||.||.||.||.||.||
BPUM_1922___i 1198 GGGATCACACGCCACGAAGGGCCTGCGATCGTATTTGAATCCCAAGAAGA 1247
BSNT_03258___ 1248 GGCGCTTGACGGCATTATCAACCGAAAAGTAAAAGAAGGCGACGTTGTTA 1297
.||.|||||.||||||||.||..||||||||.|||.|||..|.|||||.|
BPUM_1922___i 1248 AGCTCTTGAAGGCATTATTAATAGAAAAGTAGAAGCAGGACATGTTGTCA 1297
BSNT_03258___ 1298 TCATCAGATATGAAGGGCCAAAAGGCGGACCTGGCATGCCGGAAATGCTG 1347
||||..|.||||||||.||.||||||||||||||.|||||.||||||||.
BPUM_1922___i 1298 TCATTCGCTATGAAGGACCTAAAGGCGGACCTGGTATGCCAGAAATGCTT 1347
BSNT_03258___ 1348 GCGCCAACATCCCAAATCGTTGGAATGGGACTCGGACCAAAAGTGGCATT 1397
||.||.||.||.|||||.||.||.||||||||.||||||||.||.||.||
BPUM_1922___i 1348 GCTCCTACTTCACAAATTGTCGGGATGGGACTTGGACCAAAGGTTGCTTT 1397
BSNT_03258___ 1398 GATTACGGACGGACGTTTTTCCGGAGCCTCCCGTGGCCTCTCAATCGGCC 1447
.|||||.|||||||||||||||||.||.||.||.|||.|.||.|||||.|
BPUM_1922___i 1398 AATTACAGACGGACGTTTTTCCGGCGCTTCTCGCGGCTTGTCTATCGGAC 1447
BSNT_03258___ 1448 ACGTATCACCTGAGGCAGCTGAGGGCGGGCCGCTTGCCTTTGTTGAAAAC 1497
||||.||.|||||.||||||||.|||||.|||||.||.|||||||||||.
BPUM_1922___i 1448 ACGTCTCTCCTGAAGCAGCTGAAGGCGGTCCGCTCGCTTTTGTTGAAAAT 1497
BSNT_03258___ 1498 GGAGACCATATTATCGTTGATATTGAAAAACGTATCTTGGATGTACAAGT 1547
||.||||||.|..||||.||||||||..|.||.||.||...|||..|.||
BPUM_1922___i 1498 GGTGACCATGTCGTCGTCGATATTGAGCAGCGCATTTTAAGTGTCGATGT 1547
BSNT_03258___ 1548 GCCAGAAGAAGAGTGGGAAAAACGAAAAGCGAACTGGAAAGGTTTTGAAC 1597
.|||||.|||||.|||||||||.|||||||.|||||||||||.|||||||
BPUM_1922___i 1548 TCCAGAGGAAGAATGGGAAAAAAGAAAAGCAAACTGGAAAGGCTTTGAAC 1597
BSNT_03258___ 1598 CGAAAGTGAAAACCGGCTACCTGGCACGTTATTCTAAACTTGTGACGAGT 1647
|.|||||||||||.|||||.||.||..|.|||||.|||||||||||....
BPUM_1922___i 1598 CAAAAGTGAAAACTGGCTATCTTGCTAGATATTCAAAACTTGTGACATCA 1647
BSNT_03258___ 1648 GCCAACACCGGCGGTATTATGAAAATCTAG 1677
|||||.||.||.||.||.||||||||.||.
BPUM_1922___i 1648 GCCAATACAGGTGGAATCATGAAAATTTAA 1677
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